clulab bioresources issues

clulab / bioresources

Data resources from the biomedical domain

Apache License 2.0

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issues

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Update CHANGES

#57 kwalcock closed 3 years ago
0
Merge HGNC synonyms into UniProt resource file

#56 bgyori closed 3 years ago
1
Human protein synonyms from HGNC deprioritized

#55 bgyori closed 3 years ago
1
Update and improve cell type groundings

#54 bgyori closed 3 years ago
0
Import more SARS-CoV-2 synonyms

#53 bgyori closed 3 years ago
4
Support generating extra organism labels for proteins

#52 bgyori closed 3 years ago
0
Improvements to protein synonyms/NER

#51 bgyori closed 3 years ago
8
Some protein synonyms from UniProt missing from NER file

#50 bgyori opened 3 years ago
7
Update to Scala 2.12.12

#49 kwalcock closed 3 years ago
0
Fix scala version

#48 kwalcock closed 3 years ago
0
Update the NER files for v1.1.34

#47 kwalcock closed 3 years ago
1
Update the NER model then remove it

#46 kwalcock closed 3 years ago
0
Separate building of ner_kb and ner_model

#45 kwalcock closed 3 years ago
0
Add Windows version of script

#44 kwalcock closed 3 years ago
0
Readme updates

#43 bgyori closed 3 years ago
0
Integrate UniProt fragments

#42 bgyori closed 3 years ago
61
Proonto

#41 JakeWolfe closed 3 years ago
4
Updated README with local testing documentation

#40 JakeWolfe closed 3 years ago
0
Proonto

#39 JakeWolfe closed 3 years ago
1
Remove generic terms

#38 bgyori closed 3 years ago
0
Update UniProt proteins to latest state

#37 bgyori closed 3 years ago
0
Remove amino acid acronyms

#36 bgyori closed 3 years ago
2
Cross compile for 2.12

#35 myedibleenso closed 4 years ago
0
Add MeSH diseases

#34 bgyori closed 4 years ago
4
BioProcess update

#33 bgyori closed 4 years ago
5
Add new entries to stoplist

#32 bgyori closed 4 years ago
8
Update and re-enable ChEBI entries

#31 bgyori closed 4 years ago
2
Improve overrides and fix outdated GO IDs

#30 bgyori closed 4 years ago
11
Add missing empty column to overrides

#29 bgyori closed 4 years ago
14
Rename "pfam" to "family"

#28 MihaiSurdeanu closed 4 years ago
3
Update FamPlex groundings and overrides

#27 bgyori closed 4 years ago
9
Integrate HGNC names and synonyms in addition to UniProt

#26 bgyori closed 4 years ago
0
Extend Gene_or_gene_product groundings with HGNC

#25 bgyori closed 4 years ago
1
Uniprot update

#24 bgyori closed 4 years ago
25
Update resources other than FamPlex

#23 bgyori closed 4 years ago
6
Update to latest FamPlex

#22 MihaiSurdeanu closed 4 years ago
12
Update files after processors patch for emoticon parsing

#21 kwalcock closed 4 years ago
0
Update ner directory

#20 kwalcock closed 4 years ago
0
Update PubChem

#19 kwalcock closed 4 years ago
0
Update NER Override file for recent BioEntities update

#18 hickst closed 4 years ago
1
Update BioEntities family and complex KBs

#17 hickst closed 6 years ago
2
Add mitochondria to the override list

#16 enoriega closed 7 years ago
1
List of KB sources?

#15 myedibleenso closed 7 years ago
5
Added ATCC and Xia's entries

#14 enoriega closed 7 years ago
9
sbt-release

#13 marcovzla closed 7 years ago
0
Branch issue61

#12 hickst closed 7 years ago
0
Updates to manual files from BG, SRI and MITRE. Update NMZ aux file.

#11 hickst closed 8 years ago
0
Clean BioPAX KBs

#10 hickst opened 8 years ago
0
KB Cleanups

#9 hickst closed 8 years ago
3
Issue190: Replace homemade KBs

#8 hickst closed 8 years ago
0