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codercahol
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chlamy-ImPi
An image processing pipeline for time-series of Chlamydomonas reinhardtii fluorescence photos
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Local database creation
#30
codercahol
opened
6 months ago
0
Repeated data for plate 99 M1 and M5
#29
murraycutforth
opened
7 months ago
0
Preprocess all data
#28
codercahol
closed
7 months ago
4
Duplicated rows in plate 99
#27
samsongourevitch
closed
7 months ago
4
Date format
#26
samsongourevitch
closed
7 months ago
1
incorrect number of frames
#25
codercahol
opened
8 months ago
0
inconsistent program execution
#24
codercahol
opened
8 months ago
4
reprocess parquet df into a useful timeseries for analysis
#23
codercahol
opened
9 months ago
0
add dark + light thresholds
#22
codercahol
closed
8 months ago
0
Time series similarity exploration
#21
murraycutforth
opened
10 months ago
0
14 y2 normalisation
#20
murraycutforth
opened
10 months ago
1
run analyses on the Carnegie cluster
#19
codercahol
closed
7 months ago
0
remove/integrate redundant well segmentation code
#18
codercahol
opened
10 months ago
0
remove/integrate redundant inference code
#17
codercahol
opened
10 months ago
0
Possible with repeated plate-M# at different dates
#16
murraycutforth
opened
10 months ago
0
Initial clustering on continuous light data
#15
murraycutforth
opened
10 months ago
0
Y(II) normalisation
#14
murraycutforth
opened
10 months ago
0
7 database creation
#13
murraycutforth
closed
10 months ago
4
Feature extraction
#12
murraycutforth
opened
10 months ago
0
Investigate effect of using separate dark and light thresholds + masks
#11
murraycutforth
closed
7 months ago
2
Update README.md
#10
murraycutforth
closed
10 months ago
0
Error correction work in data
#9
murraycutforth
opened
10 months ago
1
Updated readme
#8
murraycutforth
closed
10 months ago
0
Database creation
#7
murraycutforth
closed
10 months ago
10
Merge my image processing branch to main
#6
murraycutforth
closed
10 months ago
1
Shared cache of preprocessed images
#5
murraycutforth
closed
10 months ago
2
Upscaling conflicting with timestep dimension?
#4
codercahol
closed
11 months ago
1
Meaning of the timestep dimension in the tif images
#3
murraycutforth
closed
11 months ago
3
Getting interactive_demo running
#2
murraycutforth
closed
11 months ago
2
Installing dependencies - torch error
#1
murraycutforth
closed
11 months ago
3