codercahol chlamy-ImPi issues

codercahol / chlamy-ImPi

An image processing pipeline for time-series of Chlamydomonas reinhardtii fluorescence photos

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Local database creation

#30 codercahol opened 4 months ago
0
Repeated data for plate 99 M1 and M5

#29 murraycutforth opened 4 months ago
0
Preprocess all data

#28 codercahol closed 4 months ago
4
Duplicated rows in plate 99

#27 samsongourevitch closed 4 months ago
4
Date format

#26 samsongourevitch closed 4 months ago
1
incorrect number of frames

#25 codercahol opened 5 months ago
0
inconsistent program execution

#24 codercahol opened 5 months ago
4
reprocess parquet df into a useful timeseries for analysis

#23 codercahol opened 7 months ago
0
add dark + light thresholds

#22 codercahol closed 5 months ago
0
Time series similarity exploration

#21 murraycutforth opened 7 months ago
0
14 y2 normalisation

#20 murraycutforth opened 7 months ago
1
run analyses on the Carnegie cluster

#19 codercahol closed 4 months ago
0
remove/integrate redundant well segmentation code

#18 codercahol opened 7 months ago
0
remove/integrate redundant inference code

#17 codercahol opened 7 months ago
0
Possible with repeated plate-M# at different dates

#16 murraycutforth opened 7 months ago
0
Initial clustering on continuous light data

#15 murraycutforth opened 7 months ago
0
Y(II) normalisation

#14 murraycutforth opened 7 months ago
0
7 database creation

#13 murraycutforth closed 7 months ago
4
Feature extraction

#12 murraycutforth opened 7 months ago
0
Investigate effect of using separate dark and light thresholds + masks

#11 murraycutforth closed 4 months ago
2
Update README.md

#10 murraycutforth closed 7 months ago
0
Error correction work in data

#9 murraycutforth opened 7 months ago
1
Updated readme

#8 murraycutforth closed 7 months ago
0
Database creation

#7 murraycutforth closed 7 months ago
10
Merge my image processing branch to main

#6 murraycutforth closed 8 months ago
1
Shared cache of preprocessed images

#5 murraycutforth closed 7 months ago
2
Upscaling conflicting with timestep dimension?

#4 codercahol closed 8 months ago
1
Meaning of the timestep dimension in the tif images

#3 murraycutforth closed 8 months ago
3
Getting interactive_demo running

#2 murraycutforth closed 8 months ago
2
Installing dependencies - torch error

#1 murraycutforth closed 8 months ago
3