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compbiocore
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qcdb
QC Database
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build(deps): bump setuptools from 61.2.0 to 65.5.1
#57
dependabot[bot]
opened
1 year ago
0
build(deps): bump certifi from 2021.10.8 to 2022.12.7
#56
dependabot[bot]
opened
1 year ago
0
build(deps): bump protobuf from 3.19.4 to 3.19.5
#55
dependabot[bot]
opened
1 year ago
0
development from docker image instead of locally
#54
aguang
opened
1 year ago
0
Add repo_id to metadata.yaml
#53
JRWallace
opened
1 year ago
0
feat: db_load to run all tool parsers
#52
aguang
opened
1 year ago
1
feat: Metadata crawler
#51
ashokrags
closed
1 year ago
2
build(deps-dev): bump codecov from 2.0.15 to 2.0.16
#50
dependabot[bot]
opened
2 years ago
0
Fastqc basic stats
#49
JRWallace
closed
2 years ago
0
'populate_db'
#48
Francis958
closed
2 years ago
0
sra_metadata as standalone function that creates `metadata.yaml` sheet
#47
aguang
closed
1 year ago
2
Update qcdb reference table
#46
JRWallace
closed
1 year ago
1
fix tests
#45
aguang
opened
2 years ago
0
build(deps): bump numpy from 1.20.1 to 1.21.0
#44
dependabot[bot]
closed
2 years ago
1
Basic Statistics
#43
JRWallace
closed
1 year ago
1
build(deps): bump protobuf from 3.9.1 to 3.15.0
#42
dependabot[bot]
closed
2 years ago
1
Modify DB to not rely on SRA ID as primary key
#41
Francis958
opened
2 years ago
1
build(deps): bump urllib3 from 1.25.3 to 1.26.5
#40
dependabot[bot]
closed
2 years ago
0
build(deps): bump urllib3 from 1.25.3 to 1.25.8
#39
dependabot[bot]
closed
3 years ago
1
build(deps): bump py from 1.8.0 to 1.10.0
#38
dependabot[bot]
closed
2 years ago
1
build(deps): bump pyyaml from 5.1.2 to 5.4
#37
dependabot[bot]
closed
2 years ago
0
changed read_type from 'NULL' to '-1' for bam metrics, closes issue-33
#36
JRWallace
closed
4 years ago
1
changed read_type from 'NULL' to '-1' for bam metrics, closes issue-33
#35
JRWallace
closed
4 years ago
0
Issue 30
#34
JRWallace
closed
4 years ago
1
unique constraint for metrics does not work if `read_type=NULL`
#33
aguang
opened
4 years ago
0
Devel
#32
aguang
closed
4 years ago
0
Issue 10
#31
aguang
closed
4 years ago
1
Parser for picardtools does not work on paired end data correctly
#30
aguang
closed
2 years ago
1
fix(fastqcParse): fastqcParser now accounts for missing modules
#29
aguang
closed
4 years ago
1
some fastqc files don't have tile quality
#28
aguang
closed
4 years ago
1
Devel
#27
aguang
closed
4 years ago
1
Merge pull request #23 from compbiocore/devel
#26
aguang
closed
4 years ago
0
Issue 14
#25
aguang
closed
4 years ago
1
Added functions, comments, and json conversion using xmljson
#24
Rhabersh
closed
5 years ago
0
first version is ready
#23
aguang
closed
5 years ago
2
fix(parsers): changed how fastqc parser deals with the extra comment …
#22
JRWallace
closed
5 years ago
1
Fix merge
#21
mcmcgrath13
closed
5 years ago
0
Fix coverage
#20
fernandogelin
closed
5 years ago
2
coverage report from tests in travis does not get uploaded to codecov
#19
aguang
closed
5 years ago
1
errors in parsing one file leads to dropping all files for that tool
#18
aguang
closed
5 years ago
0
Issue 12
#17
mcmcgrath13
closed
5 years ago
1
Add reference genome to alignment metrics
#16
JRWallace
opened
5 years ago
1
Issue 8
#15
JRWallace
closed
5 years ago
2
samplemeta needs to be have more fields
#14
aguang
closed
4 years ago
0
fix python connection
#13
mcmcgrath13
closed
5 years ago
0
minify json names
#12
mcmcgrath13
closed
5 years ago
0
create pipenv for qcdb
#11
aguang
closed
5 years ago
0
Library read type
#10
JRWallace
closed
4 years ago
2
Redundancy check
#9
JRWallace
closed
5 years ago
0
json files
#8
JRWallace
closed
5 years ago
1
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