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Update PHE labels
#69
AshleyShalloe
closed
3 months ago
0
Dev
#68
rmcolq
opened
1 year ago
0
Compatibility definition for v0.1.11 in pangolin
#67
OnePotato2
closed
1 year ago
3
Add xbb
#66
rmcolq
closed
1 year ago
0
Updated PHE_label and tags with new nomenclature
#65
AshleyShalloe
closed
2 years ago
1
Define minimal required scorpio version
#64
wm75
opened
2 years ago
0
Question: Nucleotide mutations behind amino acid mutations in .json definitions
#63
mikelchtermans
closed
2 years ago
2
Dev
#62
aineniamh
closed
2 years ago
1
remove duplicated mutations from omicron sublineages/recombinant
#61
hsnguyen
closed
2 years ago
4
Adding in XE parent cascade lineage definitions and removing the probably BA.4 and BA.5 definition.
#60
aineniamh
closed
2 years ago
0
adding in BA.4 and BA.5 constellations
#59
aineniamh
closed
2 years ago
0
update mutation checked for non-ref as per https://github.com/cov-lin…
#58
rmcolq
closed
2 years ago
0
Dev
#57
rmcolq
closed
2 years ago
0
Dev
#56
rmcolq
closed
2 years ago
0
fix duplicate entry #53
#55
rmcolq
closed
2 years ago
0
Update cAY.4.2.json
#54
AshleyShalloe
closed
2 years ago
0
`nuc:C15714T` appears twice in definition of cBA.2
#53
philipwfowler
closed
2 years ago
0
update to allow non probable amplicon dropout
#52
rmcolq
closed
2 years ago
0
Add definition for BA.3 and add probable B.1.1.529 definition instead of only probable BA.1
#51
rmcolq
closed
2 years ago
0
Update cB.1.1.7.json
#50
AshleyShalloe
closed
2 years ago
0
resolve #48
#49
rmcolq
closed
2 years ago
0
in-string comment in cBA.1.json keeps breaking backwards-compatibility with scorpio
#48
wm75
closed
2 years ago
1
Dev
#47
rmcolq
closed
2 years ago
0
BA.1-like vs BA.2
#46
hsnguyen
closed
2 years ago
1
Comments in site definitions are problemaic
#45
nekrut
closed
2 years ago
3
Latest constellations and/or designations creates pangolin failure
#44
quaeler
closed
2 years ago
7
Update omicron
#43
rmcolq
closed
2 years ago
1
update with suggestions from #41 and widen the net of probable omicro…
#42
rmcolq
closed
2 years ago
0
Modifications to B.1.1.529 (Omicron) definition
#41
rambaut
closed
2 years ago
1
remove probable from mrca_lineage
#40
rmcolq
closed
2 years ago
0
add probable omicron definition
#39
rmcolq
closed
2 years ago
0
add who name
#38
rmcolq
closed
2 years ago
0
increase max_ref to handle (some) pipelines which call for ref
#37
rmcolq
closed
2 years ago
0
Add B.1.1.529 constellation
#36
rmcolq
closed
2 years ago
0
Split epsilon into 2 constellation files
#35
rmcolq
closed
2 years ago
1
Split epsilon into 2 constellation files
#34
rmcolq
closed
2 years ago
0
Updated AY.4.2 definition file to better match agreed VTG definition
#33
rambaut
closed
2 years ago
5
Documentation for new components of constellation definitions (incompatible, intermediate)
#32
aretchless
closed
2 years ago
2
revert change removing incompatible lineages AY.1 and AY.2 from B.1.6…
#31
rmcolq
closed
2 years ago
0
Dev
#30
rmcolq
closed
2 years ago
0
Dev
#29
rmcolq
closed
2 years ago
0
Dev
#28
rmcolq
closed
2 years ago
0
Incorrect Definition for C.37
#27
marcoriojas
closed
3 years ago
2
Source data
#26
Resonanz
closed
3 years ago
1
Change mutations to cover 738 of 739 B.1.623 representatives instead of 2 of 739
#25
AngieHinrichs
closed
3 years ago
2
cB.1.623 excludes all but two B.1.623 representative sequences
#24
AngieHinrichs
closed
3 years ago
2
Add mutations and increase max_ref to more fully cover B.1.526: see #22
#23
AngieHinrichs
closed
3 years ago
4
cB.1.526.json too narrow: excludes 66 of 253 representative sequences in pango-designation for B.1.526 / Iota
#22
AngieHinrichs
closed
3 years ago
0
Dev
#21
rmcolq
closed
3 years ago
0
Dev
#20
rmcolq
closed
3 years ago
0
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