cozygene FEAST issues - Githubissues

cozygene / FEAST

Fast expectation maximization for microbial source tracking

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Using FEAST for metagenomic data

#64 AUAShen opened 3 weeks ago
0
issue with FEAST matrix

#63 lorenzovergani89 opened 1 month ago
0
q2-FEAST plugin

#62 khemlalnirmalkar opened 2 months ago
0
demo data error: Error in rowSums(C[c(train.ix, test.ix), ]) 'x' must be an array of at least two dimensions

#61 lorenzovergani89 opened 2 months ago
3
Reliability with Single Source and Sink Samples

#60 jianglory opened 7 months ago
0
Installation issue

#59 nikolgr closed 7 months ago
3
Error in if (abs(m_guesses[length(m_guesses)] - m_guesses[length(m_guesses) - :missing value where TRUE/FALSE needed

#58 KyleRowe1230 opened 8 months ago
3
Remove setwd() from image output

#57 abossers-uu opened 9 months ago
0
How to use existing data as source?

#56 AkilaMuthalagu closed 8 months ago
2
"Load_metadata" function

#55 ghost closed 9 months ago
0
Package ‘FEAST’ not available for the latest version of R(4.3.1)

#54 ghost closed 9 months ago
0
could not find function "Load_metadata"

#53 kelly-xia opened 1 year ago
1
Cannot understand the parameter named "Coverage"

#52 diego00012138 opened 1 year ago
0
Error in if (sum(x[i, ]) > maxdepth) { : missing value where TRUE/FALSE needed

#51 rubmc97 closed 1 year ago
2
Error in mixing_proportions[which(rownames(mixing_proportions) %in% SinkNames), : incorrect number of dimensions

#50 melissaszy opened 1 year ago
12
'x' must be an array of at least two dimensions

#49 AkilaMuthalagu closed 9 months ago
2
'list' object cannot be coerced to type 'integer'

#48 melissaszy opened 1 year ago
6
Error in M_fn(alphas = curalphas, sources = sources, sink = sink, observed = observed, : unused argument (options = options)

#47 YyLu5 opened 1 year ago
1
Error in totalsource_2[(j + 1), ] <- t(unknown_source_rarefy)

#46 awsdd opened 1 year ago
5
Could not find function "Infer.SourceContribution"

#45 kbazany closed 1 year ago
6
incorrect number of dimensions

#44 FlorenciaTL closed 1 year ago
2
Error in PlotSourceContribution

#43 gauguinP closed 1 year ago
2
Reproducibility of demo data

#42 CamilaDuitama opened 2 years ago
2
error "There is no "FEAST" function'

#41 704913307 opened 2 years ago
1
Error in FEAST(source = sources, sinks = t(sinks), env = envs[train.ix], :

#40 704913307 opened 2 years ago
1
Data result analysis(the comprehensive contribution ratio of a certain environment(soil))

#39 CXang opened 2 years ago
0
How to calculate the count value of metaOTU？

#38 timeresistance1996 opened 2 years ago
1
Error in if (!is.element(class(x), c("matrix", "data.frame", "array"))) x <- matrix(x, : the condition has length > 1

#37 b-robinson opened 2 years ago
3
I want to try to run FEAST, but our data is metagenomic and not 16s, how can I get something like OTU tables? Thanks.

#36 yangjintao0626 closed 2 years ago
0
There were 50 or more warnings (use warnings() to see the first 50) run with FEAST

#35 timeresistance1996 opened 2 years ago
2
Error in rowSums(C[c(train.ix, test.ix), ]) with FEAST

#34 timeresistance1996 closed 2 years ago
0
Error in rowSums(C[c(train.ix, test.ix), ])

#33 timeresistance1996 closed 2 years ago
0
Is FEAST parallelized?

#32 liaochen1988 closed 2 years ago
1
otu table error?

#31 kruehling closed 2 years ago
2
Problem installing FEAST in R

#30 wangjianing0618 opened 2 years ago
1
Which the results in FEAST_output$data_prop can be used？

#29 WeichuanLin6688 closed 2 years ago
3
Erreur dans if (sum(x[i, ]) > maxdepth) { : valeur manquante là où TRUE / FALSE est requis

#28 zina-R opened 2 years ago
2
Error in sprintf("Error: there are %d sample ids in common ") : too few arguments

#27 develynw opened 3 years ago
8
I calculate the source of each sample using the samples group completely same with them, which obtained strange numbers

#26 kingtom2016 closed 3 years ago
0
Count table orientation

#25 cyklee opened 3 years ago
1
Error in R

#24 sbornbusch opened 3 years ago
5
What is the id column?

#23 NeginValizadegan opened 3 years ago
1
Problem installing FEAST in R

#22 NeginValizadegan opened 3 years ago
2
error when trying to install devtools::install_github("cozygene/FEAST")

#21 NeginValizadegan closed 3 years ago
0
Calls: as.matrix -> rarefy

#20 XiongGZ opened 3 years ago
1
Can not replicate result

#19 yjiakang opened 3 years ago
5
Error in if (sum(x[i, ]) > maxdepth) { : missing value where TRUE/FALSE needed using Nonunique_Sources branch

#18 sixvable closed 2 years ago
13
HOW to get each source tax adu ?

#17 alienn233 opened 3 years ago
0
Progress bar for FEAST function

#16 AdeBC closed 4 years ago
0
error running FEAST: Error in if (sum(x[i, ]) > maxdepth) { : missing value where TRUE/FALSE needed

#15 sklasek closed 4 years ago
12