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csiro-crop-informatics
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repset
Reproducible evaluation of short read mappers
GNU General Public License v3.0
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Google cloud execution
#65
rsuchecki
opened
4 years ago
0
Update containers
#64
rsuchecki
opened
4 years ago
1
Capture warnings in JSON/report
#63
rsuchecki
opened
4 years ago
0
Feature/ci tests
#62
rsuchecki
closed
4 years ago
0
Feature/collect versions
#61
rsuchecki
closed
4 years ago
0
container images for Rmd rendering
#60
rsuchecki
opened
4 years ago
0
Create main.yml
#59
rsuchecki
closed
4 years ago
0
Docker/renderer/0.4.1
#58
rsuchecki
closed
4 years ago
0
report generation
#57
rsuchecki
closed
4 years ago
0
Added json2csv process
#56
rsuchecki
closed
4 years ago
0
Feature/task resources in meta
#55
rsuchecki
closed
4 years ago
0
catchup
#54
rsuchecki
closed
4 years ago
0
release generation update
#53
rsuchecki
closed
4 years ago
0
Validity of run-time comparisons
#52
rsuchecki
opened
4 years ago
0
updated release and artefact upload
#51
rsuchecki
closed
4 years ago
0
onComplete fails with NXF_VER newer than 19.04.0
#50
rsuchecki
closed
4 years ago
0
Separate documentation form README?
#49
rsuchecki
opened
4 years ago
0
Results, artefacts, persistence
#48
rsuchecki
opened
4 years ago
1
Alternative read simulator?
#47
rsuchecki
closed
4 years ago
0
Additional mappers?
#46
rsuchecki
closed
4 years ago
1
Further reproducibility wish-list
#45
rsuchecki
opened
5 years ago
0
Failed parallel singularity pulls
#44
rsuchecki
opened
5 years ago
3
Add CI
#43
rsuchecki
closed
4 years ago
2
Results presentation v2
#42
rsuchecki
opened
5 years ago
1
prot2dna
#41
nathanhaigh
closed
5 years ago
1
Separate primary from secondary and supplementary alignment correctness stats
#40
rsuchecki
closed
5 years ago
1
Gene-level rna2rna evaluation?
#39
rsuchecki
opened
5 years ago
2
Different versions of the same tool
#38
rsuchecki
closed
5 years ago
0
RNF evaluation slow
#37
rsuchecki
closed
5 years ago
2
Additional genomes for evaluation
#36
rsuchecki
closed
4 years ago
1
Dynamic resource allocation or exposed max resources params
#35
rsuchecki
closed
5 years ago
0
Include pseudoalignment approaches
#34
rsuchecki
closed
5 years ago
1
Docker/rnftools/0.3.1.3
#33
rsuchecki
closed
5 years ago
0
Explicit package versions install in rscipts.Dockerfile?
#32
rsuchecki
opened
5 years ago
0
More recent rnftools containers not fully functional
#31
rsuchecki
closed
5 years ago
0
Multiple alignment runs/settings for a given tool/index
#30
rsuchecki
closed
5 years ago
0
Get basic stats for any set of real reads
#29
rsuchecki
closed
4 years ago
0
Read simulation from any genome and alignment eval
#28
rsuchecki
closed
5 years ago
2
Capture failed task in report?
#27
rsuchecki
opened
5 years ago
0
Results presentation
#26
rsuchecki
closed
5 years ago
1
Further modularise
#25
rsuchecki
closed
4 years ago
1
more permissive licence?
#24
rsuchecki
closed
5 years ago
0
Docker/rscripts/0.5
#23
rsuchecki
closed
5 years ago
0
Points for paper
#22
rsuchecki
closed
5 years ago
0
put this work in context of eLIFE's reprodcible article
#21
rsuchecki
closed
5 years ago
0
Singularity builds
#20
rsuchecki
closed
5 years ago
2
Report/manuscript rendering if output file exists
#19
rsuchecki
closed
4 years ago
0
Container versions may not be enough - combine with commit SHA?
#18
rsuchecki
opened
5 years ago
4
Capture workflow metadata
#17
rsuchecki
closed
5 years ago
3
Docker/renderer/0.2
#16
rsuchecki
closed
5 years ago
0
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