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databio
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bedbase
Aggregate, analyze, and serve genomic regions.
http://bedbase.org/
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Search doc update
#76
ClaudeHu
opened
3 weeks ago
0
Dev search docs
#75
khoroshevskyi
closed
4 weeks ago
0
Geniml Release
#74
khoroshevskyi
closed
3 weeks ago
0
2024-05 BEDbase sprint
#73
nsheff
opened
1 month ago
0
Update tokenizer docs
#71
nleroy917
closed
1 month ago
0
updated bedhost docs
#70
khoroshevskyi
closed
2 months ago
0
Universes in the database
#69
khoroshevskyi
opened
2 months ago
1
Updated bedbase docs
#68
khoroshevskyi
closed
2 months ago
0
Data curation
#67
khoroshevskyi
opened
2 months ago
3
Update document according to changes in geniml.search
#66
ClaudeHu
closed
2 months ago
0
Dev julia
#65
nsheff
closed
2 months ago
0
bedset/genomes returns 500 error
#64
jwokaty
closed
2 months ago
1
BEDbase documentation updates
#63
nsheff
closed
2 months ago
1
2024-03 BEDbase sprint
#62
nsheff
closed
2 months ago
1
Bad gateway for api.bedbase.org
#61
jwokaty
closed
3 months ago
2
Added bedboss and bedhost and bbconf docs
#60
khoroshevskyi
closed
4 months ago
0
text2bednn doc update
#59
ClaudeHu
closed
4 months ago
0
Bedboss
#58
khoroshevskyi
closed
4 months ago
0
Copy over fresh docs
#57
nleroy917
closed
4 months ago
0
Streamline retrieving pephub metadata of bed records
#56
nsheff
closed
2 months ago
4
Identifying extra columns in BED files
#54
jwokaty
opened
6 months ago
4
Make GEO uploading automatic by using bbuploader
#53
khoroshevskyi
opened
7 months ago
0
Add Encode dataset to bedbase
#52
khoroshevskyi
closed
2 months ago
2
Add LOLA dataset to bedbase
#51
khoroshevskyi
closed
2 months ago
4
Streamlining bedboss running
#49
nsheff
closed
4 months ago
0
Dev bedboss
#48
khoroshevskyi
closed
10 months ago
0
Dev
#47
nsheff
closed
10 months ago
0
Reconfigured deployment to divide front and back-end
#46
nsheff
closed
3 months ago
1
Bedbase --> next steps in details (backend)
#45
khoroshevskyi
closed
3 months ago
2
Index all BED files into vector database
#41
nsheff
closed
2 months ago
6
BEDbase natural language search data table for embedding approach
#37
nsheff
opened
1 year ago
11
Bedstats: should allowed database update if data changed for a bedfile
#36
xuebingjie1990
closed
4 months ago
1
Bedboss/Bedstats: how to get required files needed for Bedstats (GD)
#34
xuebingjie1990
closed
4 months ago
0
Pipestat/bbconf
#32
xuebingjie1990
closed
10 months ago
3
Bedembed/human-friendly search: need to be useful not just a proof of concept
#31
xuebingjie1990
closed
11 months ago
1
automate BEDbase data process pipeline (heavy processing)
#30
xuebingjie1990
closed
7 months ago
2
Bedhost-ui: ui upgrade
#29
xuebingjie1990
closed
1 year ago
0
Bedstats: resolving failed GD stats/plot for genomes other than hg19/hg38/mm10
#28
xuebingjie1990
closed
1 year ago
0
Bedqc: bedboss should automatically ignore bedqc-filtered BED files
#27
xuebingjie1990
closed
4 months ago
2
Bedmaker: fail to generate bigbed files
#26
xuebingjie1990
closed
1 year ago
1
Flexibility of back-end data
#25
nsheff
closed
1 year ago
2
Bedboss: testing with bedboss
#24
xuebingjie1990
closed
3 months ago
8
Bedbuncher/Bedhost-ui: How to organize/show BED sets with different ref genome on BEDbase.org
#23
xuebingjie1990
closed
2 months ago
1
Update info about downloading all bed files
#21
khoroshevskyi
closed
2 years ago
0
Link BEDbase with pephub: use PEPhub for auto metadata update
#20
xuebingjie1990
closed
3 months ago
1
Solved issues of non existing variables
#19
khoroshevskyi
closed
2 years ago
0
Environment variable $CODE is not initialized
#18
khoroshevskyi
closed
2 years ago
1
environment variable $REFGENIE is not added in the tutorial
#17
khoroshevskyi
closed
2 years ago
1
Fixed errors in the tutorial files
#16
khoroshevskyi
closed
2 years ago
0
Bedembed: Tutorial files for Bedembed
#15
xuebingjie1990
closed
4 months ago
1
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