issues
search
dib-lab
/
dib_rotation
Metagenomics DIB-lab rotation project
https://dib-lab.github.io/dib_rotation/
BSD 3-Clause "New" or "Revised" License
3
stars
8
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
[WIP] added python=3.6 to kofamscan and created new khmer env
#80
ccbaumler
opened
8 months ago
0
[MRG] Update the sourmash doc with gather and tax
#79
ccbaumler
opened
8 months ago
0
maybe also add other unix tutorials
#78
ctb
opened
8 months ago
0
[MRG] Include unix tutorial doc in background reading
#77
ccbaumler
closed
8 months ago
1
MRG: minor updates to formatting and content
#76
ctb
closed
8 months ago
0
[MRG]clarify and explain codes in "Assembling a Nbhd"
#75
yuenchingshen
closed
10 months ago
1
[MRG]clarify and explain codes in "Find and download the data"
#74
yuenchingshen
closed
10 months ago
0
[MRG]clarify and explain codes in "Bin Completion with Spacegraphcats"
#73
yuenchingshen
closed
10 months ago
0
[MRG] additional info on using vim
#72
yuenchingshen
closed
10 months ago
0
broken link in "Bin Completion with Spacegraphcats"
#71
yuenchingshen
closed
10 months ago
0
Sourmash lca gather not a command anymore
#70
nkavaler1
closed
8 months ago
1
[MRG]solved scp broken link issues on the "Starting a Work Session" Page #54
#69
yuenchingshen
closed
10 months ago
0
[MRG] corrected t- denotes mentioned on the "Starting a Work Session" Page #54 and corrected broken link Issues
#68
yuenchingshen
closed
10 months ago
0
[MRG]different user name reminder
#67
yuenchingshen
closed
10 months ago
0
[MRG]Farm Account Setup
#66
yuenchingshen
closed
10 months ago
0
Linking farm notes to dib_rotation
#65
nkavaler1
opened
11 months ago
0
The 00a_unix.md file is not visible in the dib-lab metagenomics rotation project
#64
bscruz
closed
8 months ago
0
[MRG] fixed scp on Quality Control page - issue #60
#63
nkavaler1
closed
10 months ago
1
[MRG] fixed typos on background reading
#62
nkavaler1
closed
10 months ago
0
Sourmash lca gather not a command anymore
#61
nkavaler1
opened
1 year ago
1
Quality Control scp
#60
nkavaler1
closed
10 months ago
0
Config file for farm
#59
nkavaler1
opened
1 year ago
0
Python 3.6 needed to install khmer
#58
nkavaler1
opened
1 year ago
0
[WIP] Removing from scp cmd
#57
ccbaumler
closed
12 months ago
0
issue on "rotation project Find and download the data" page
#56
yuenchingshen
closed
11 months ago
0
Metagenomics Project: "Find and download the data" SCP code
#55
nkavaler1
closed
10 months ago
4
Issues on the "Starting a Work Session" Page
#54
nkavaler1
closed
10 months ago
1
Typos on background reading page
#53
nkavaler1
closed
10 months ago
0
Farm user name many be different than email
#52
ccbaumler
opened
1 year ago
0
[WIP] Farm Account Setup
#51
nkavaler1
opened
1 year ago
3
KEGG Decoder Recursion Error
#50
evanjh19
opened
1 year ago
0
10 Annotating amino acid sequences
#49
ccbaumler
opened
2 years ago
3
Conda init [y/n] and -h, --help command
#48
ccbaumler
opened
2 years ago
1
[MRG] a 2022 update - fix many misc things!
#47
ctb
closed
2 years ago
5
08 Bin Completion with Spacegraphcats: Sourmash compute -> sourmash sketch
#46
ccbaumler
closed
2 years ago
0
08 Bin Completion with Spacegraphcats: Mamba > Snakemake?
#45
ccbaumler
closed
2 years ago
0
07_taxonomic_discovery_with_sourmash compute > sketch
#44
ccbaumler
closed
2 years ago
0
07_taxonomic_discovery_with_sourmash
#43
ccbaumler
closed
2 years ago
0
06_Quality_Control-Python Version Issue
#42
ccbaumler
closed
2 years ago
0
Broken Links
#41
ccbaumler
closed
2 years ago
1
[WIP] Add "how to contribute" doc
#40
hehouts
closed
3 years ago
1
add instructions for updating this site
#39
bluegenes
closed
3 years ago
1
change default branch name to `main` or `latest`
#38
ctb
opened
3 years ago
0
add kofamscan installation fix
#37
bluegenes
closed
3 years ago
0
update 2020_rotation_project to 2021_rotation_project, or something else that won't go out of date each year
#36
taylorreiter
opened
3 years ago
0
Make sure CTRL-C appears somewhere in the rotation project documentation, preferably early on
#35
taylorreiter
opened
3 years ago
0
replace . with ./ in tutorials
#34
taylorreiter
closed
2 years ago
0
Add conda install kofamscan
#33
bryshalm
closed
3 years ago
1
Update 04b_starting_a_work_session.md
#32
bluegenes
closed
3 years ago
0
srun session does not work
#31
clmattson-zz
opened
3 years ago
1
Next