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dms-vep
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RABV_Pasteur_G_DMS
Deep mutational scan of the Rabies Virus Glycoprotein (RABV-G), Pasteur strain
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remove extraneous material from configuration YAMLs
#21
jbloom
closed
1 hour ago
0
is there any reason we cannot make repo public now as we continue to work on it?
#20
jbloom
closed
2 hours ago
2
Rename linker domain from `Linker_*` to just `Linker`
#19
jbloom
closed
2 hours ago
1
rename the `Linker_*` domains to just be called `Linker`
#18
jbloom
closed
5 hours ago
0
change site_number_map.csv linker annotations
#17
arjunaditham
closed
2 hours ago
1
fix site_numbering_map
#16
arjunaditham
closed
5 hours ago
1
mutation frequency criteria revision
#15
arjunaditham
opened
1 week ago
1
Expand mutation counting to phylogroup I lyssaviruses
#14
Caleb-Carr
closed
5 hours ago
3
Don't drop duplicate sequences when counting mutation frequencies
#13
Caleb-Carr
closed
1 week ago
1
Better sequence host classification
#12
Caleb-Carr
closed
1 week ago
1
better organize `./data/` subdirectory
#11
jbloom
closed
5 hours ago
1
update `dms-vep-pipeline-3`
#10
jbloom
closed
4 months ago
0
probably floor escape at zero (unless we find an antibody where it makes sense)
#9
jbloom
closed
4 months ago
1
consider a higher antibody `escape_std` filter (it may not be needed at all)
#8
jbloom
closed
5 hours ago
0
lower functional effect filter for antibody escape
#7
jbloom
closed
5 hours ago
3
update to latest version of `dms-vep-pipeline-3`
#6
jbloom
closed
5 months ago
0
Update dms-vep-pipeline-3 to 3.8.0 and add preliminary natural sequence variation
#5
Caleb-Carr
closed
4 months ago
0
consider if `times_seen` of 2 is better than 3
#4
jbloom
closed
8 months ago
3
improve README
#3
jbloom
closed
8 months ago
1
clean up extraneous files and organize a bit more
#2
jbloom
closed
8 months ago
1
configure to analyze just mutations in the mutated ectodomain region
#1
jbloom
closed
8 months ago
4