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drostlab
/
myTAI
Evolutionary Transcriptomics with R
https://drostlab.github.io/myTAI/
GNU General Public License v2.0
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`PairwiseTest()` for comparing TAI between two conditions/contrasts, e.g. male vs female.
#43
LotharukpongJS
closed
1 month ago
1
Preparing for cran
#42
lavakin
closed
3 months ago
0
Added new logo
#41
LotharukpongJS
closed
9 months ago
0
LICENSE file missing
#40
bgruening
closed
10 months ago
2
Higher resolution logo
#39
LotharukpongJS
closed
10 months ago
0
OpenMP for parallelisation with the Apple M1 chip
#38
LotharukpongJS
opened
10 months ago
3
Huge variance issue fixed
#37
lavakin
closed
10 months ago
1
`CollapseReplicates()` always returns `Phylostratum` as the first column.
#36
LotharukpongJS
closed
10 months ago
2
Variance issue fixed, ks fit chaged
#35
lavakin
closed
11 months ago
1
Updates to `Discussing Genomic Phylostratigraphy` and `Introduction to the myTAI package`
#34
LotharukpongJS
closed
11 months ago
3
generators added
#33
lavakin
closed
11 months ago
0
fixes drostlab/myTAI#31
#32
lavakin
closed
11 months ago
0
FlatLineTest `Error in gamma_MME[[3]] : subscript out of bounds. `
#31
LotharukpongJS
closed
11 months ago
1
Clarified equation for `pMatrix`, `pMatrixTEI` and `pStrataTEI`.
#30
LotharukpongJS
closed
11 months ago
0
Update README.md
#29
LotharukpongJS
closed
11 months ago
1
`PlotSignatureTransformed()`: Removed `vst` from the default transforms parameter
#28
LotharukpongJS
closed
12 months ago
2
Openmp and libomp check
#27
lavakin
closed
12 months ago
9
Eigen and permutations parallelization, Progressbar, instructions in readme
#26
lavakin
closed
1 year ago
17
Add figures to the homepage of the package site
#25
LotharukpongJS
closed
1 year ago
1
Updated website to reflect recent contributions
#24
LotharukpongJS
closed
1 year ago
3
Rewrote the rest of non-parallel cpp functions, that may benefit from LA library to Eigen
#23
lavakin
closed
1 year ago
1
Motivation - method bias
#22
kullrich
closed
1 year ago
4
FlatLineTest cpp functions now using Eigen library, >30% speed up
#21
lavakin
closed
1 year ago
3
Add badge Bioconda install
#20
gallardoalba
closed
1 year ago
0
Reopening PR #18
#19
LotharukpongJS
closed
1 year ago
0
`PlotSignatureTransformed()` function added
#18
LotharukpongJS
closed
1 year ago
2
improved fit, added ks-test
#17
lavakin
closed
1 year ago
4
p-value in `PlotSignature()`as subtitle
#16
LotharukpongJS
closed
1 year ago
1
Changes to README and DESCRIPTION
#15
LotharukpongJS
closed
1 year ago
1
Citations in the DESCRIPTION file
#14
LotharukpongJS
closed
1 year ago
1
Conda package
#13
gallardoalba
closed
1 year ago
16
Issues template added and update to `README.md`
#12
LotharukpongJS
closed
1 year ago
1
New functionalities for transformation and test functions
#11
LotharukpongJS
closed
1 year ago
1
What's the real mean of expression data/level
#10
Chenleinice
closed
1 year ago
2
Significance status of signature: NA
#9
maxnest
opened
2 years ago
3
TAI for transcriptomes in different conditions
#8
weikai-320722
closed
3 years ago
2
using an API key
#7
erinhunter4
closed
3 years ago
2
Suggestion
#6
dmontecino
closed
1 year ago
3
Defining Divergence Stratum
#5
YXXEMXL
closed
5 years ago
1
Update PlotCIRatio.R
#4
ljljolinq1010
closed
6 years ago
0
Add files via upload
#3
ljljolinq1010
closed
6 years ago
0
Retriving parent taxonomy for specific Taxonomy ID
#2
abb44
closed
7 years ago
1
Phylostratum of other organism
#1
vinaybaranwal
closed
8 years ago
4