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epi2me-labs
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wf-transcriptomes
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all recent changes (xenofilter and small other code chunks)
#47
agata-sm
closed
6 months ago
2
Differential Expression Analysis Error
#46
NanoCoreUSA
closed
7 months ago
2
samtools error ([main_samview] fail to read the header from "-") during DE analysis ... empty bam file?
#45
cea295933
closed
6 months ago
69
wrong MA plot in report
#44
lukashellmann
closed
2 months ago
6
running wf-transcriptomes on HPC using sbatch
#43
cea295933
closed
7 months ago
5
fastcat error (exit status 1) aborting epi2me runs using GUI on Windows
#42
cea295933
closed
7 months ago
5
running nextflow/epi2me using slurs
#41
cea295933
closed
7 months ago
2
ref_genome parameter
#40
achang44
closed
7 months ago
8
Process `fastcat (1)` terminated with an error exit status (127)
#39
SabeenRaza75
closed
5 months ago
14
Output BAM file?
#38
phillip-richmond-alamya
closed
6 months ago
3
Inquiry about Data Availability for 'transcripts_per_gene' Analysis in wf-transcriptomes Report
#37
tabatakenshiro
closed
4 months ago
5
random reference condition sent to edgeR
#36
RPdavies
closed
7 months ago
6
random reference condition sent to edgeR
#35
CMB-research
closed
8 months ago
0
Spoa not found
#34
ahishsujay
closed
9 months ago
2
Non-zero exit status at DE analysis stage
#33
eiwai81
closed
8 months ago
4
Denovo removed?
#32
NStrowbridge
closed
9 months ago
4
Command not found
#31
cjw85
closed
9 months ago
1
About gene and isoform count matrix
#30
wuy24
closed
9 months ago
2
TPM table for all transcripts from all samples please!
#29
Mememe231
closed
7 months ago
5
About Example workflow for denovo transcript assembly
#28
yucenwan00
closed
9 months ago
7
wrong option for direct RNA in documentation
#27
Mordziarz
closed
9 months ago
1
typo in command
#26
flokraft85
closed
10 months ago
2
Outputs missing?
#25
dsobral
closed
10 months ago
3
[Bug]: Error in Annotation summary plots
#24
CWYuan08
closed
9 months ago
3
Results from pychopper or minimap2 not found
#23
dakomura
closed
10 months ago
4
Differential expression result
#22
cmetadea
closed
10 months ago
2
[Bug]: Command error & Error executing process
#21
geng-lee
closed
10 months ago
2
[Bug]: Process `pipeline:reference_assembly:map_reads (1)` terminated with an error exit status (143)
#20
rocanja
closed
1 year ago
2
Data output files and report don't match - e.g. # of total reads aren´t assigned to the same samples
#19
SamanthaStewart
closed
10 months ago
5
[Bug]: R langversion too old (>= 1.1.0 required)
#18
tensulin
closed
1 year ago
2
[Bug]: wf-glue: error: unrecognized arguments: batches in Clustering
#17
Johnsonzcode
closed
9 months ago
16
Mismatch Error with Files
#16
topasnaa
closed
11 months ago
31
[Bug]: fastcat Command error: touch: cannot touch '.command.trace': Permission denied
#15
AngusNano
closed
1 year ago
4
[Bug]: denovo assembly fails during clustering
#14
spflanagan
closed
11 months ago
3
pychopper options with cDNA prepared using LSK114
#13
yxsee
closed
8 months ago
2
[Bug]: Differential expression analysis error @pipeline:differential_expression:deAnalysis
#12
steve391242
closed
10 months ago
6
Question about transcript quantification method
#11
sunshine-lp0
closed
10 months ago
2
[Bug]: ERROR ~ expecting '}', found ',' @ line 229, column 44
#10
gaobaoqing-picb
closed
12 months ago
2
small typos in doc
#9
splaisan
closed
11 months ago
2
add hpc slurm support
#8
tensulin
closed
1 year ago
1
fix: csv file incorrectly specified as tsv file
#7
tensulin
closed
1 year ago
1
[Bug]: Trying to run on docker, fails on mapping
#6
Dan2389
closed
1 year ago
2
Trying to run with Singularity, does not start
#5
keenhl
closed
1 year ago
1
Try to run workflow using Conda, does not start
#4
keenhl
closed
1 year ago
1
Pipeline not working in CentOS
#3
camillaugolini-iit
closed
11 months ago
3
Update typo in README.md
#2
edwwlui
closed
1 year ago
1
[Issue]: Running in cluster
#1
Chandrima-04
closed
1 year ago
3
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