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etal
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cnvkit
Copy number variant detection from targeted DNA sequencing
http://cnvkit.readthedocs.org
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custom genome and sex chromosome error
#669
acontrerasg
opened
2 years ago
2
ValueError: Reference is missing 1 bins found in xx.sort_dedup
#668
asmlgkj
closed
2 years ago
3
Use of cnvkit in germline haploid samples
#667
pabloangulo7
opened
2 years ago
0
make: python: Command not found make: *** [Makefile:50: build/reference-picard.cnn] Error 127
#666
TheMuffinMan563
closed
2 years ago
2
CNV size
#665
lmanchon
opened
2 years ago
0
Display numerical range and color scale in plots in diagram/ideogram and heatmap
#664
Optimistix
opened
2 years ago
3
Error running test
#661
ytakemon
opened
2 years ago
4
Diagnosing issues with sample output
#660
waemm
opened
2 years ago
0
PKD1 gene show negative log2CN with high coverage.
#659
zhuhenan
closed
2 years ago
2
cnvkit.py export
#658
lmanchon
closed
2 years ago
3
snipfilter.sh: question
#657
sotaro-kanematsu
closed
2 years ago
1
snipfilter.sh: question
#656
sotaro-kanematsu
opened
2 years ago
3
VCF file recommendations
#655
tea-kostic
opened
2 years ago
1
CNVkit exon del detection
#654
skose82
closed
2 years ago
2
skip CNV with low read depth
#653
lmanchon
opened
3 years ago
0
Title for heatmap + heatmap code cleaning
#652
tetedange13
closed
2 years ago
1
how to accurately select samples from cnvkit.py metrics *.cnr -s *.cns
#651
worker000000
opened
3 years ago
3
Diagram plotting output changes drastically when using the annotate option
#650
gtollefson
opened
3 years ago
1
Script for cn_ztest.py not available. Posted on Biostars
#649
skose82
closed
2 years ago
3
genemetrics is reporting genes from first chromosome only
#648
npojo
closed
3 years ago
3
Call function return infinite number without log2 and abs CN.
#647
zhuhenan
opened
3 years ago
8
Improve bintest doc
#646
tetedange13
closed
2 years ago
0
Triangles for seg masked by pruning at 'ymin=-5'
#645
tetedange13
closed
2 years ago
1
Calling Focal CN (False Negatives in Segmentation)
#644
ashbig
opened
3 years ago
1
Default y-min in chromsome scatter plots
#643
micknudsen
closed
2 years ago
12
It's my autobin result ,is it normal ?
#642
rahhhm
closed
3 years ago
6
Parameter to set 'scatter' plot size
#641
tetedange13
closed
3 years ago
1
is autobin need for tumor sample in tumor only mode
#640
worker000000
closed
2 years ago
17
is there any software for purity analysis for cnvkit
#639
worker000000
opened
3 years ago
1
Improve error message when coordinate set contains duplicate values
#638
tskir
closed
3 years ago
1
cnvkit fix doesn't produce cnr file
#637
khuhu
closed
3 years ago
6
inconsistency between cns file and targeted coverege file
#636
enes-ak
opened
3 years ago
6
how can I analyse gender spesific CNV analysis with CNVkit?
#635
enes-ak
opened
3 years ago
7
Diagram: switches for limiting by chromosome and for disabling gene labels
#634
tetedange13
closed
3 years ago
3
Additional heatmap refactor
#632
tskir
closed
3 years ago
4
Mitochondrion genome analysis
#631
katajar
opened
3 years ago
3
Difference between geneLevel CN from WES (cnvkit) and geneLevel CN from snp6.0
#630
zhouxuzhouxu
opened
3 years ago
6
diagram parameter
#629
lmanchon
closed
3 years ago
10
germline WES
#628
lmanchon
closed
3 years ago
7
Can I use output of featurecounts output to replace the input of import-rna?
#627
deb0612
closed
3 years ago
3
CN from log2 is inaccurate at times
#626
ashbig
closed
3 years ago
3
Support for vertical heatmap and various plotting refactor
#625
tetedange13
closed
3 years ago
8
segment hmm / hmm-tumor / hmm-germline method error
#624
TuanTrain
closed
3 years ago
2
Experimental support for GISTIC export
#623
tetedange13
closed
3 years ago
6
How to export gistic markers?
#622
BioComSoftware
closed
3 years ago
7
Difference of log2 values between .cnr file and .bintest
#621
Fponelle
closed
2 years ago
8
ValueError in coverage subcommand
#620
tea-kostic
opened
3 years ago
9
Error building docker image
#619
tea-kostic
closed
3 years ago
4
Improve documentation for read_auto()
#618
BJWiley233
closed
2 years ago
4
Scatter plot seems to have noise
#617
jeongmeani
opened
3 years ago
6
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