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fractal-analytics-platform
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fractal-tasks-core
Main tasks for the Fractal analytics platform
https://fractal-analytics-platform.github.io/fractal-tasks-core/
BSD 3-Clause "New" or "Revised" License
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Running Cellpose on an empty ROI table leads to concatenate ValueError during ROI table creation
#561
jluethi
closed
10 months ago
0
Cellpose output ROI tables miss encoding zattrs values
#560
jluethi
closed
10 months ago
0
Print some logs from `build_pyramid`
#559
tcompa
closed
10 months ago
0
Review compatibility of MIP and import-ome-zarr task
#558
tcompa
closed
10 months ago
7
Introduce import-ome-zarr task
#557
tcompa
closed
10 months ago
7
Bump imagecodecs from 2023.8.12 to 2023.9.18
#556
dependabot[bot]
closed
10 months ago
0
Fix 554 (check valid roi indices is too strict)
#555
tcompa
closed
10 months ago
1
`check_valid_ROI_indices` is too strict
#554
jluethi
closed
10 months ago
0
Add extras to conda-forge feedstocks
#611
tcompa
opened
10 months ago
0
Bump pillow from 9.5.0 to 10.0.1
#552
dependabot[bot]
closed
10 months ago
0
Do not install docs dependencies in GitHub CI (close #550)
#551
tcompa
closed
10 months ago
1
Include `--without docs` in `poetry install` in CI GitHub actions
#550
tcompa
closed
10 months ago
0
Bump urllib3 from 2.0.4 to 2.0.6
#549
dependabot[bot]
closed
10 months ago
0
Make `Channel.window` attribute optional in `lib_ngff.py`
#548
tcompa
closed
10 months ago
1
Omero channels window parameters became required unintentionally with 0.12.0 changes
#547
jluethi
closed
10 months ago
1
Publish on conda-forge
#546
tcompa
closed
10 months ago
2
Add new build/publish actions (close #544)
#545
tcompa
closed
10 months ago
1
Publish to PyPI via dedicated GitHub action
#544
tcompa
closed
10 months ago
0
Review support for Python 3.9.0 and 3.9.1
#543
tcompa
closed
8 months ago
2
Fix import error
#542
tcompa
closed
10 months ago
2
Remove zarr-errors handling from tasks
#541
tcompa
opened
10 months ago
1
De-duplicate Pydantic models in `lib_channels.py` and `lib_ngff.py`
#540
tcompa
opened
10 months ago
0
Unpin fsspec version constraint
#539
tcompa
closed
10 months ago
1
Fetch `ManifestV1` from fractal-server in tests (close #537)
#538
tcompa
closed
10 months ago
1
Replace `fractal-common/schemas` with `fractal_server/schemas` in tests
#537
tcompa
closed
10 months ago
0
Unpin fsspec version constraint (close #508)
#536
tcompa
closed
10 months ago
1
Disable or improve multiple resources in input_paths functionality?
#535
jluethi
closed
4 months ago
1
Add checks on ROI origin
#534
tcompa
closed
10 months ago
1
Fix docs build in CI
#533
tcompa
closed
10 months ago
0
Review label/label-image use in napari-workflows-wrapper task
#532
tcompa
closed
10 months ago
4
Could we only include the `tasks` subpackage when `fractal-tasks` extra is installed?
#531
tcompa
closed
2 months ago
2
Add checks on ROI origin
#530
tcompa
closed
10 months ago
2
Define table specifications V1
#529
tcompa
closed
9 months ago
3
Introduce Pydantic models for NGFF metadata
#528
tcompa
closed
10 months ago
7
Do not use mutable default in `prepare_FOV_ROI_table` and `prepare_well_ROI_table`
#527
tcompa
closed
11 months ago
0
Update new datasets to Zenodo
#526
tcompa
closed
8 months ago
3
`reset_origin` should not modify its input
#525
tcompa
closed
11 months ago
0
Set ROI origin to match well origin
#524
tcompa
closed
11 months ago
11
Adapt to (upcoming) split of metadata/components
#523
tcompa
closed
4 months ago
0
Introduce `import-ome-zarr` task
#521
tcompa
closed
10 months ago
3
Cellpose task doesn't handle 2D MD data anymore
#520
jluethi
closed
11 months ago
2
Fix for race condition in apply_registration_to_image
#517
jluethi
closed
11 months ago
2
Race condition in Apply Registration to image task
#516
jluethi
closed
7 months ago
2
Improve overwrite-related error messages by breaking lines (ref #512)
#515
tcompa
closed
11 months ago
1
Fix list of `plate` components in create_ome_zarr_multiplexing
#514
tcompa
closed
11 months ago
0
Fix plate selection in copy_ome_zarr task
#513
tcompa
closed
11 months ago
4
Improve `OverwriteNotAllowedError` error messages
#512
tcompa
closed
11 months ago
2
Update registration tasks to be overwrite compatible
#511
jluethi
closed
1 month ago
1
Rerunning a workflow with copy OME-Zarr task leads to _mip_mip.zarr files
#510
jluethi
closed
11 months ago
6
Add constraint for fsspec version (ref #508)
#509
tcompa
closed
11 months ago
1
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