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galaxy-iuc
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standards
Documentation for standards and best practices from the Galaxy IUC
http://galaxy-iuc-standards.readthedocs.io/en/latest/
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Subcommands recommendation
#77
bernt-matthias
closed
5 months ago
1
Add bio.tools/EDAM section to tool_xml.rst
#76
supernord
closed
9 months ago
6
Introduce `creator` tag in `xml_order` in top level tool.xml file
#75
hechth
opened
1 year ago
3
Rewrite best practices to encourage tabs
#74
hexylena
opened
1 year ago
10
Tabs should be permitted, maybe even mandatory.
#73
hexylena
opened
1 year ago
5
Clarify how `license` tags should be used for tools
#72
elichad
opened
1 year ago
5
Remove outdated Tool Dependency Package section
#71
nsoranzo
closed
2 years ago
0
Tool dependency packages section out of date
#70
elichad
closed
2 years ago
1
Sync xrefs position in tool XML order with galaxy-tool-util
#69
nsoranzo
closed
2 years ago
0
Fix typo
#68
abretaud
closed
2 years ago
0
Modify recommended test data sets size
#67
gallardoalba
closed
2 years ago
10
Guidelines for additional output parameters
#66
bernt-matthias
opened
2 years ago
3
Specifying a tool maintainer in `.shed.yml` files
#65
simonbray
opened
3 years ago
3
Documentation of the commands to run to test a tool
#64
bebatut
opened
3 years ago
0
require zipped data if possible
#63
bernt-matthias
closed
2 years ago
2
Require a recent profile in IUC guide lines
#62
bernt-matthias
closed
3 years ago
0
Fix links to travis in docs
#61
bernt-matthias
closed
3 years ago
1
Add docs for xrefs and EDAM best practices
#60
hmenager
closed
3 years ago
1
Proposal: recommend defining a @VERSION_SUFFIX@ token in addition to a @TOOL_VERSION@ token
#59
simonbray
closed
3 years ago
23
Suggestion for an order of IDs/links annotations
#58
matuskalas
opened
4 years ago
7
Recommend not redirecting stderr
#57
mvdbeek
opened
4 years ago
1
Recommendations on arbitrary parameter fields (security risks?)
#56
peterjc
opened
5 years ago
2
update for argument rules
#55
bernt-matthias
closed
4 years ago
0
Versioning scheme improvements
#54
bernt-matthias
closed
5 years ago
2
Change "Tool on data N" output file naming to something without spaces?
#53
mblue9
opened
6 years ago
2
Recommend tool `version` format
#52
nsoranzo
closed
6 years ago
22
Tool versions vs wrapper versions
#51
Slugger70
closed
6 years ago
39
Coding style improvements
#50
nsoranzo
closed
6 years ago
1
When should we write separate scripts and when should we use configfiles
#49
mvdbeek
opened
6 years ago
2
More suggested edits for checklist
#48
mblue9
closed
6 years ago
1
Fix checklist for tool-data
#47
mblue9
closed
6 years ago
10
Need $PATH_TO_IMAGES for images in tool help
#46
peterjc
closed
7 years ago
4
EDAM ontology topics should be applied to tools
#45
hexylena
opened
7 years ago
2
Recommend $input.extra_files_path vs $output.files_path
#44
peterjc
closed
7 years ago
1
indentation in CDATA blocks like command and help
#43
peterjc
opened
7 years ago
5
Use `<section>` for advanced options
#42
nsoranzo
closed
6 years ago
8
Add `argument` to the suggested param attribute order
#41
nsoranzo
closed
7 years ago
2
file_path vs extra_file_path
#40
martenson
closed
7 years ago
7
Update suggested param attribute order
#39
nsoranzo
closed
7 years ago
0
Advanced options (clear conditional labels vs collapsed section)
#38
peterjc
closed
6 years ago
3
Formalize container best practice (esp. for complex tools)
#37
jmchilton
opened
7 years ago
5
Recommendations on bundling related tools in one Tool Shed repository?
#36
peterjc
opened
7 years ago
4
xsd:boolean does not allow True.
#35
bgruening
opened
7 years ago
4
Fix links
#34
nsoranzo
closed
7 years ago
1
Clarify that also Cheetah code should be indented
#33
nsoranzo
closed
7 years ago
3
Clarify use of booleans and conditionals for dynamic options
#32
lparsons
closed
7 years ago
1
Add links and info about testing failure states and output filters.
#31
jmchilton
closed
7 years ago
2
Every tool needs a requirement?
#30
bgruening
opened
8 years ago
6
Bug squashing since we talked about this repo a bit at GCC
#29
hexylena
closed
8 years ago
3
IUC Needs a Logo
#28
hexylena
closed
6 years ago
7
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