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garber-lab
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ESAT
Stripped-down version of original ESAT code
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zero counts: wrong options or ESAT not working?
#31
ferreirafm
opened
1 year ago
0
eID for single cell RNA-seq
#30
vetsuisse-unibe
opened
3 years ago
3
Integrate Python error script into Java
#29
samdzie
opened
4 years ago
0
Extension overlaps null. - extension shortened to negative value
#28
ampodu
closed
7 years ago
4
Added a description for how to download the latest version of the ESAT
#27
ADerr
closed
7 years ago
0
2016 11 30 singlecell
#26
ADerr
closed
7 years ago
0
Merge pull request #2 from garber-lab/develop
#25
ADerr
closed
7 years ago
0
2016 06 15 singlecell
#24
ADerr
closed
7 years ago
0
Added umiMin parameter to set the minimum number of observations of a
#23
ADerr
closed
8 years ago
0
Update to readme and minor error handling changes
#22
mgarber
closed
8 years ago
0
Develop
#21
mgarber
closed
8 years ago
0
Added reporting of "Total aligned UMIs" and "Total de-duped UMIs" to
#20
ADerr
closed
8 years ago
0
Modified PCR duplicate removal process to use temporary files that are
#19
ADerr
closed
8 years ago
0
Added -filtAT <n> command-line switch to remove any reads with stretches
#18
ADerr
closed
8 years ago
0
Added -filtAT command-line switch and implementation of long-A/T filter
#17
ADerr
closed
8 years ago
0
Replaced -nextPrep and -inPrep single-cell flags with -scPrep. All
#16
ADerr
closed
8 years ago
0
Changes:
#15
ADerr
closed
8 years ago
0
Three changes: 1) umiMin default changed from 10 to 0; 2) all genes,
#14
ADerr
closed
8 years ago
0
Switched the order of 'proper' multimapper handling and single-cell PCR
#13
ADerr
closed
9 years ago
0
Corrected parsing of barcode and UMI from the read ID. Now only assumes
#12
ADerr
closed
9 years ago
0
Fixed a bug in the window-level read counting
#11
ADerr
closed
9 years ago
0
score bug fix and pval printing per sample now
#10
elisadonnard
closed
9 years ago
0
build ribosat too
#9
afirth
closed
9 years ago
0
Changed default input parameter values. Default window length is now 50
#8
ADerr
closed
9 years ago
0
2015 08 15 travis
#7
afirth
closed
9 years ago
0
inDrop
#6
ADerr
closed
9 years ago
0
Merge pull request #1 from garber-lab/develop
#5
mgarber
closed
9 years ago
0
Merging inDrop processing
#4
ADerr
closed
9 years ago
0
In drop
#3
ADerr
closed
9 years ago
0
Added the initial ribosat modifications, pval and score for each window
#2
elisadonnard
closed
9 years ago
0
Casava read identification compliance
#1
mgarber
closed
9 years ago
0