garber-lab ESAT issues - Githubissues

garber-lab / ESAT

Stripped-down version of original ESAT code

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zero counts: wrong options or ESAT not working?

#31 ferreirafm opened 1 year ago
0
eID for single cell RNA-seq

#30 vetsuisse-unibe opened 3 years ago
3
Integrate Python error script into Java

#29 samdzie opened 4 years ago
0
Extension overlaps null. - extension shortened to negative value

#28 ampodu closed 7 years ago
4
Added a description for how to download the latest version of the ESAT

#27 ADerr closed 7 years ago
0
2016 11 30 singlecell

#26 ADerr closed 7 years ago
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Merge pull request #2 from garber-lab/develop

#25 ADerr closed 7 years ago
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2016 06 15 singlecell

#24 ADerr closed 7 years ago
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Added umiMin parameter to set the minimum number of observations of a

#23 ADerr closed 7 years ago
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Update to readme and minor error handling changes

#22 mgarber closed 7 years ago
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Develop

#21 mgarber closed 7 years ago
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Added reporting of "Total aligned UMIs" and "Total de-duped UMIs" to

#20 ADerr closed 8 years ago
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Modified PCR duplicate removal process to use temporary files that are

#19 ADerr closed 8 years ago
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Added -filtAT <n> command-line switch to remove any reads with stretches

#18 ADerr closed 8 years ago
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Added -filtAT command-line switch and implementation of long-A/T filter

#17 ADerr closed 7 years ago
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Replaced -nextPrep and -inPrep single-cell flags with -scPrep. All

#16 ADerr closed 8 years ago
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Changes:

#15 ADerr closed 8 years ago
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Three changes: 1) umiMin default changed from 10 to 0; 2) all genes,

#14 ADerr closed 8 years ago
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Switched the order of 'proper' multimapper handling and single-cell PCR

#13 ADerr closed 8 years ago
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Corrected parsing of barcode and UMI from the read ID. Now only assumes

#12 ADerr closed 8 years ago
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Fixed a bug in the window-level read counting

#11 ADerr closed 8 years ago
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score bug fix and pval printing per sample now

#10 elisadonnard closed 8 years ago
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build ribosat too

#9 afirth closed 8 years ago
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Changed default input parameter values. Default window length is now 50

#8 ADerr closed 8 years ago
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2015 08 15 travis

#7 afirth closed 8 years ago
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inDrop

#6 ADerr closed 8 years ago
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Merge pull request #1 from garber-lab/develop

#5 mgarber closed 8 years ago
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Merging inDrop processing

#4 ADerr closed 8 years ago
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In drop

#3 ADerr closed 8 years ago
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Added the initial ribosat modifications, pval and score for each window

#2 elisadonnard closed 8 years ago
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Casava read identification compliance

#1 mgarber closed 9 years ago
0