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ggloor
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ALDEx_bioc
ALDEx_bioc is the working directory for updating bioconductor
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pairwise T-test always set to FALSE in `aldex()` function
#75
Yixuan39
opened
2 months ago
0
Feature request: implement robust regression in glm to minimizes the influence of outliers
#74
aimirza
opened
4 months ago
0
Feature Request: Support for Using Features/Taxa/Genes as Explanatory Variables in aldex.glm
#73
aimirza
opened
4 months ago
0
Error when running run_aldex with kruskal or glm_anova for more than 2 level comparisons on "microbiomeMarker" package
#72
LauGuaUuu
opened
5 months ago
0
Adding Scale Uncertainty Fails
#71
DrLMee
closed
6 months ago
1
Rearranging dataframe changes output and Benjamini-Hochberg corrected p-value estimates differ between Bioconductor and developer version
#70
wiederkf
opened
6 months ago
0
Asymmetric datasets
#69
vyom84
opened
7 months ago
0
Cannot install
#68
theo-allnutt-bioinformatics
closed
7 months ago
2
ALDEx2 new version (1.32.0) output effect size difference from (1.28.1)
#67
davis-rudolfs
opened
10 months ago
2
merge level/master
#66
ggloor
closed
10 months ago
0
Devel
#65
ggloor
closed
10 months ago
0
Devel
#64
ggloor
closed
10 months ago
0
updating the scale vignette
#63
ggloor
closed
11 months ago
0
Michelle scale
#62
ggloor
closed
11 months ago
0
aldex.ttest not working as demonstrated
#61
slschnorr
closed
1 year ago
1
repaired aldex.glm
#60
ggloor
closed
1 year ago
1
Michelle scale
#59
ggloor
closed
1 year ago
0
How to perform pairwise comparisons between three or more groups in R
#58
LeandroD94
opened
1 year ago
5
Michelle scale
#57
ggloor
closed
1 year ago
0
Question regarding the significance of the results
#56
vdijckthomas
closed
1 year ago
7
ALDEx2 on large dataset gives memory not mapped error
#55
Rridley7
closed
1 year ago
13
aldex.corr giving unexpected results
#54
LunavdL
opened
1 year ago
2
Update clr function to allow user-defined denominators
#53
ggloor
closed
1 year ago
0
Scale
#52
michellepistner
closed
1 year ago
0
added volcano plot
#51
ggloor
closed
1 year ago
0
Log fold change with 95% confidence intervals
#50
andrewmaltezthomas
opened
1 year ago
0
pass aldex.glm.effect args to aldex.effect
#49
pooranis
closed
1 year ago
1
merge scale to main aldex branch
#48
ggloor
closed
2 years ago
0
interpretation of t test conflicting results
#47
elayton13
closed
2 years ago
2
Subsetting / pairwise comparisons
#46
elayton13
closed
2 years ago
1
`aldex.effect` returns the same effect for every feature when `CI=T`
#45
amorris28
closed
2 years ago
1
How to interpretate the aldex.glm() output?
#44
zhq90
closed
2 years ago
1
aldex.ttest issue
#43
dkropp2
closed
2 years ago
2
Fix1.25.1
#42
ggloor
closed
2 years ago
0
aldex.effect include.sample.summary issue
#41
JEckenberger
closed
2 years ago
1
effect size for paired samples
#40
pooranis
closed
2 years ago
3
Effect_value_interpretation
#39
StefanoCast
closed
3 years ago
2
Parallel
#38
ggloor
closed
3 years ago
1
Working with multiple timepoints in aldex.glm( )
#37
mirpie
opened
3 years ago
0
suspicious pattern in results
#36
sformel
closed
3 years ago
3
aldex.ttest for paired testing
#35
sbslee
closed
3 years ago
2
another question about running on HPC
#34
sformel
closed
3 years ago
6
Installation via Anaconda not working on Mac OS and Linux
#33
sbslee
closed
3 years ago
8
how to run ALDEX2 on multicore ?
#32
MonicaSteffi
closed
3 years ago
4
Option for providing self-computed IQLR or CLR?
#31
jolespin
closed
2 years ago
2
Aldex.clr object subsetting description
#30
K-Pimentel
opened
4 years ago
2
Aldex clr_function.R bug when using the glm function
#29
tbrowne5
closed
2 years ago
1
Allow cmultRepl from zCompositions and option not to add 0.5 pseudocount
#28
aimirza
closed
4 years ago
1
revert aldex.corr and fix aldex.effect bug
#27
ggloor
closed
4 years ago
0
Negative num. error when running aldex.effect for alr transformation
#26
aimirza
closed
4 years ago
1
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