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gpertea
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stringtie
Transcript assembly and quantification for RNA-Seq
MIT License
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Gffcompare and Stringtie FPKM estimation?
#291
TommySchooner
opened
4 years ago
1
Compatibility of -c and -e options?
#290
fairliereese
opened
4 years ago
2
Stringtie tmp folder is not deleted
#289
asumann
opened
4 years ago
4
Why are many Strands in my results a "."?
#288
jmzhang1911
closed
9 months ago
2
no reference transcripts were found for the genomic sequences where reads were mapped!
#287
TommySchooner
opened
4 years ago
5
Mutliple ref_gene_name for a given gene_id in merged GTF
#286
dantaki
opened
4 years ago
0
segmentation fault with 2.1.2
#285
dputhier
closed
4 years ago
2
Getting raw read counts directly
#284
chbk
opened
4 years ago
2
UTR extension
#283
francicco
opened
4 years ago
0
Interpretation of the results
#282
xiaoyezao
opened
4 years ago
0
abundance of retained introns
#281
zji90
opened
4 years ago
0
Installation Error for SuperReads
#280
sum732
closed
4 years ago
2
Superreads assigned to opposite strand
#279
olawa
opened
4 years ago
2
Which workflow do I use for DE analysis in Ballgown?
#278
nattzy94
opened
4 years ago
0
More details on -L option
#277
LehmannN
opened
4 years ago
2
Can StringTie --merge be used to create a slightly improved reference annotation?
#276
ggstatgen
opened
4 years ago
4
Ballgown stoping writing to the tmp, but it does not crash
#275
GabyBG
opened
4 years ago
15
./samtools-0.1.18/bgzf.h:29:10: fatal error: zlib.h: No such file or directory
#274
THZ34
closed
4 years ago
1
Stringtie --merge segfaults with pinfish input
#273
conchoecia
closed
4 years ago
2
Error: discarding overlapping duplicate mRNA feature in version 2.0
#272
luciaq21
opened
4 years ago
5
updated manual to elaborate on -L option
#271
wrf
closed
4 years ago
1
Same gene id for multiple genes
#270
m-waqas
opened
4 years ago
4
TPMs quantified as zero or values larger than zero depending on the StringTie options
#269
AndreVelasquez
closed
4 years ago
1
stringtie analyze bam of STAR
#268
QuanLG
opened
4 years ago
1
transcripts are lost after stringtie merge
#267
Kennyluo4
opened
4 years ago
4
Question: Does the bam file needs indexing ?
#266
Tdanis
closed
4 years ago
1
Question:Appropriate Star-mapping options
#265
Tdanis
closed
4 years ago
1
Update reallocators.hpp
#264
ljyanesm
closed
2 years ago
0
Large changes in FPKMs in the same genes and samples when using different annotation files in -e
#263
Wylezils
opened
4 years ago
1
stringtie does not assign the strand for sam files with setted XS tag
#262
camillaugolini-iit
opened
4 years ago
10
Transcripts of only one exon
#261
reutnuri
closed
4 years ago
3
stringtie v2.1.0 stalls with -L option unless -t also specified
#260
biorover
closed
4 years ago
4
stringtie-2.0.6 GBitVec: index 45 out of bounds
#259
kylepalos
closed
4 years ago
1
StringTie failing with reference GTF file
#258
asmitagpta
closed
4 years ago
2
Single genes have multiple transcripts generated
#257
RamaSravanimeduri
opened
4 years ago
0
Stringtie: *** Error in `stringtie': corrupted double-linked list: 0x00000000020c4910 ***
#256
zhang919
closed
4 years ago
2
Multiple errors with the same dataset
#255
tshori
opened
4 years ago
11
prevent stringtie from joining adjacent genes
#254
wrf
opened
4 years ago
0
The visualization found that there are counts comparison on my gene but the quantitative result is 0
#253
pynie1
opened
4 years ago
3
rm binary "all_tests" in source tree
#252
smoe
closed
4 years ago
0
error while installing stringTie
#251
asmitagpta
closed
4 years ago
3
Inconsistent number of records in the -A output
#250
dbrg77
opened
4 years ago
2
Non-existing gene names being assigned to known genes
#249
wyoibc
closed
4 years ago
3
update conda receipe
#248
nalcala
closed
4 years ago
1
StringTie --merge changes length of known transcripts
#247
matwright8
opened
4 years ago
2
problem with stringtie prepDE.py
#246
Pallavimore
closed
4 years ago
2
Error in prepDE.py
#245
nourelislam
closed
4 years ago
1
Options and the output do not seem to match well.
#244
nowandnow
opened
4 years ago
0
clarification on TPM (-T <min_tpm>) option in Stringtie merge
#243
vinay-swamy
opened
4 years ago
0
Odd models
#242
nhartwic
opened
4 years ago
0
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