gpertea stringtie issues

gpertea / stringtie

Transcript assembly and quantification for RNA-Seq

MIT License

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issues

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Error in prepDE.py

#245 nourelislam closed 5 years ago
1
Options and the output do not seem to match well.

#244 nowandnow opened 5 years ago
0
clarification on TPM (-T <min_tpm>) option in Stringtie merge

#243 vinay-swamy opened 5 years ago
0
Odd models

#242 nhartwic opened 5 years ago
0
Stringtie merge

#241 nourelislam opened 5 years ago
0
Stringtie: the input alignment file is not sorted!

#240 realgc closed 5 years ago
11
Quite different gene expression calculated by stringtie and ballgown

#239 weiwFu opened 5 years ago
0
Error when running prepDE.py

#238 ms-gx opened 5 years ago
24
multiple Gene IDs, same coordinates with different strand assignments in abundance estimation

#237 glarue opened 5 years ago
0
Segmentation fault stringtie v2.0.1

#236 fgypas closed 5 years ago
3
Error at GBitVec, stringtie version 2.0

#235 fgypas closed 5 years ago
9
preDE.py stops at the second file

#234 AishMandya closed 5 years ago
24
Vendored samtools is missing files

#233 dpryan79 closed 5 years ago
3
Key error when adding genes to geneDict in prepDE.py

#232 astrophys closed 5 years ago
5
Segmentation fault using StringTie2 prebuilt

#231 smallfade closed 5 years ago
5
same gene_id in distant genomic locations

#230 GrantHov opened 5 years ago
2
prepDE.py error - line 255 - gene ID related

#229 pratibha-bioinfo closed 5 years ago
3
Stringtie2 installation: undefined reference to _intel_fast_memset'

#228 NatPRoach opened 5 years ago
5
Stringtie2 segmentation fault

#227 knewl closed 5 years ago
15
Trouble installing stringtie2

#226 NatPRoach closed 5 years ago
2
Release of v2

#225 mmiladi closed 5 years ago
1
Unknown strand in merged assembly

#224 m-waqas opened 5 years ago
0
count number is much less than the one generated by HTSeq

#223 nzl0016 opened 5 years ago
2
Protein_id missing from StringTie GTF file

#222 Buuntu opened 5 years ago
0
Stringtie Stuck on Chromsome21

#221 Liuy12 opened 5 years ago
1
stringtie --merge gives error messages

#220 nozabey opened 5 years ago
9
How dose stringtie deal with reads with inconsistent alignment strand and XS attribute?

#219 freedog8 opened 5 years ago
0
output of merge a bit unclear to me

#218 BioLionMM opened 5 years ago
0
Multiple gene names mapping to a single gene ID

#217 crj32 opened 5 years ago
3
Generating Count Data From a Single Sample

#216 erichpeterson opened 5 years ago
0
Stringtie outputs negative TPM values.

#215 liscruk closed 5 years ago
2
Stringtie merge converts Ensemble GTF to MSTRG

#214 cryptic0 opened 5 years ago
2
FPKM values don't sum up to 1mio

#213 MassaBob opened 5 years ago
4
Does StringTie --merge still discard shorter transcripts that could exist in reality

#212 sneha100895 opened 5 years ago
0
Extract reads(ids) that support a tx model

#211 sschmeier opened 5 years ago
0
Single-end strand-specific rna-seq data parameters?

#210 wisense opened 5 years ago
3
Combine genes named by MSTRG in different sample with prepDE.py

#209 tenger-github opened 5 years ago
0
How does Prepde.py extract count

#208 qinqin1995 opened 5 years ago
0
Abundance estimation after Minimap2 alignment

#207 foolsgold opened 5 years ago
9
Disreprency in counts between MSTRG genes and nonMSTRG genes

#206 Xalyonders closed 6 years ago
2
StringTie dealing with the read alignments which do not have the XS tag

#205 lauraht opened 6 years ago
7
Unspecific strand

#204 francicco opened 6 years ago
27
Segmentation Fault with annotation file

#203 EreboPSilva opened 6 years ago
3
Inconsistent gene number in geneAbund.txt

#202 ifantasy opened 6 years ago
1
Keeping transcript id labels from old GTFs when merging gtfs

#201 vinay-swamy opened 6 years ago
0
Strand of single exon transcripts ?

#200 john-bio01 closed 6 years ago
2
Inconsistent number of significant digits from gene abundance output

#199 wpoehlm closed 6 years ago
2
Multiple gene names associated with a single FPKM value

#198 EgeDede562 opened 6 years ago
0
identification of novel exons from human alignment data

#197 kokonech closed 6 years ago
5
Strange Stringtie Error!!!

#196 amoltej closed 6 years ago
3

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