guigolab ggsashimi issues

guigolab / ggsashimi

Command-line tool for the visualization of splicing events across multiple samples

MIT License

122 stars 42 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Unable to read chr positions on x-axis

#101 alig99 opened 3 weeks ago
3
How can I make the width range of the curves more easily to observed?

#100 iriirica opened 3 months ago
0
Labels of sashimi plot

#99 jaempawi opened 6 months ago
1
ERROR: No available bam files.

#98 RaghdaKailany opened 6 months ago
2
Duplicate arc appears for each junction using example_run.sh

#97 britney-chu opened 10 months ago
1
added dependencies for image outputs

#96 alanfwilliams closed 5 months ago
4
ggsashimi can easy read from remote BAMs if allowed to do it

#95 diekhans opened 1 year ago
0
How assign color if I am interested only in one sample

#94 Kuttucat closed 1 year ago
1
Executing ggsashimi with singularity

#93 amberdeja closed 1 year ago
4
Junctions not being plotted or generated when running

#92 Benrahan closed 1 year ago
1
Colors not working

#91 naqvia closed 1 year ago
2
So many junctions and intron-like gaps

#90 Seanduu closed 1 year ago
2
Output PDF

#89 luisafmc closed 1 year ago
2
Help with example

#88 luisafmc closed 2 years ago
1
Program hangs / freezes

#87 royfrancis closed 2 years ago
2
Duplicate coverage output

#86 cahn20 closed 1 year ago
3
Individual exon junction cut-off

#85 ulbivin opened 2 years ago
0
Error in FUN(X[[i]], ...) : object 'V1' not found

#84 sopenaml closed 2 years ago
2
C stack usage error

#83 umranyaman closed 2 years ago
3
IndexError: list index out of range

#82 gurpreet-bioinfo closed 2 years ago
3
error regarding intersect_introns

#81 xiaonalu closed 1 year ago
17
Error running docker latest docker image (v.1.1.0)

#80 PedroBarbosa closed 2 years ago
2
Error in R

#79 hmyh1202 closed 2 years ago
2
invalid contig issue

#78 OnkarMulay closed 2 years ago
2
Update ggsashimi.py

#77 AminMahpour closed 2 years ago
1
No density plots

#76 valarauko closed 3 years ago
1
Read counts (y-axis)

#75 hkmztrk closed 3 years ago
2
Remove number of reads

#74 adomingues closed 3 years ago
1
ValueError: invalid contig `chr1`

#73 patchthr33 closed 3 years ago
3
Coordinates of splicing events

#72 nick294 closed 3 years ago
2
Support for CIGAR strings containing `X` and `=` ops

#71 mbabadi opened 3 years ago
1
Exon annotation not matching read coverage visualization

#70 paulklemm closed 3 years ago
2
Median aggregation is identical to mean aggregation

#69 dgarrimar closed 3 years ago
1
TypeError: argument of type 'NoneType' is not iterable

#68 Wangchangsh closed 3 years ago
15
variant annotation

#67 hkmztrk closed 2 years ago
6
ggsashimi doesn't work on my data

#66 Aikaterini-Chatzipli closed 3 years ago
3
junction shift

#65 Vita-github closed 3 years ago
2
ploting only predefined junctions

#64 Vita-github opened 3 years ago
1
collapsed colouring options

#63 AMChalkie closed 3 years ago
4
Fix small bug in BED junction file generation

#62 dgarrimar closed 3 years ago
0
Profile running time & RAM usage

#61 dgarrimar opened 3 years ago
0
gzipped gtf errors out when filtering out commented lines

#60 dgarrimar closed 3 years ago
0
Color alternative transcripts according to transcript type (retained intron, processed transcript, etc)

#59 luxeredias opened 3 years ago
0
Move CI to Actions

#58 emi80 closed 3 years ago
0
Add version info and command line option

#57 emi80 closed 3 years ago
0
Add debug information output

#56 emi80 closed 3 years ago
1
Warnings when using --fix-y-scale

#55 dgarrimar closed 3 years ago
0
Update CI with more versions of R and ggplot2

#54 emi80 closed 3 years ago
1
Use pysam for bam file handling

#53 emi80 closed 3 years ago
1
handle KeyError: transcript_id not found

#52 ygidtu closed 3 years ago
1