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haotianteng
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Chiron
A basecaller for Oxford Nanopore Technologies' sequencers
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Confusions about the basecalling labels
#121
chengyangWang-cell
opened
1 month ago
0
chunks consensus
#120
F0nz0
closed
9 months ago
1
Bump scipy from 1.0.1 to 1.10.0
#119
dependabot[bot]
opened
1 year ago
0
Bump grpcio from 1.11.0 to 1.53.0
#118
dependabot[bot]
opened
1 year ago
0
Bump protobuf from 3.5.2.post1 to 3.18.3
#117
dependabot[bot]
opened
2 years ago
0
Bad Results for Basecalling after Training own Model
#116
goevea
closed
9 months ago
0
Bump html5lib from 0.9999999 to 0.999999999
#115
dependabot[bot]
opened
2 years ago
0
Bump numpy from 1.14.2 to 1.22.0
#114
dependabot[bot]
opened
2 years ago
0
Bump html5lib from 0.9999999 to 0.99999999
#113
dependabot[bot]
closed
2 years ago
1
Biopython incompatible while installing Chiron using PIP
#112
Saranya-nanobiophotonics-lab
closed
2 years ago
1
Bump protobuf from 3.5.2.post1 to 3.15.0
#111
dependabot[bot]
closed
2 years ago
1
How to train a similar model
#110
mrubio-chavarria
closed
3 years ago
1
Failed to start the call
#109
BJ-Chen-Eric
closed
3 years ago
1
Chiron file depreciated?
#108
KFeye
closed
3 years ago
1
Bump bleach from 1.5.0 to 3.3.0
#107
dependabot[bot]
closed
3 years ago
1
Quastions about the datasets
#106
bellstwohearted
closed
3 years ago
1
How to make the evaluation to work on multiple cores
#105
drdivine
closed
4 years ago
1
Bump bleach from 1.5.0 to 3.1.4
#104
dependabot[bot]
closed
3 years ago
1
Bump bleach from 1.5.0 to 3.1.2
#103
dependabot[bot]
closed
4 years ago
1
Bump bleach from 1.5.0 to 3.1.1
#102
dependabot[bot]
closed
4 years ago
1
mute adapter trimming
#101
ShaokangZhang
closed
4 years ago
1
Preset arguments
#100
lab-rat-kid
closed
5 years ago
1
tensorflow - failed to call cuInit
#99
lab-rat-kid
closed
4 years ago
2
Not able to run on centos
#98
lab-rat-kid
closed
5 years ago
1
Bump werkzeug from 0.14.1 to 0.15.3
#97
dependabot[bot]
closed
4 years ago
1
Error when run base call step
#96
adaxidedakaonang
closed
5 years ago
3
Fast5 files corresponding to the .signal files provided.
#95
ardakdemir
closed
5 years ago
1
Assembly accuracy using racon
#94
ardakdemir
closed
5 years ago
6
Cannot extract read_id attribute
#93
ardakdemir
closed
5 years ago
2
training data preparation
#92
WenxuZhang
closed
5 years ago
1
Edit distance Calculation
#91
ardakdemir
closed
5 years ago
1
Basecalling with DNA_default
#90
ardakdemir
closed
5 years ago
1
Error when training model using raw signals
#89
ardakdemir
closed
5 years ago
2
Confusion about labeled samples from the paper
#88
drewstone
closed
5 years ago
1
Source installation instructions not working
#87
jackwadden
closed
5 years ago
3
Plans to update the example models?
#86
paradisebee
closed
5 years ago
1
Raw data is not stored in Raw/Reads/Read_[read#] so new segments cannot be identified
#85
pdimens
closed
4 years ago
4
Add version info
#84
tarunaaggarwal
closed
5 years ago
2
Deprecated tenslorflow
#83
tarunaaggarwal
closed
5 years ago
15
Parameter inconsistency in `read_raw_data_sets()`
#82
franrodalg
closed
5 years ago
1
Test data available in the paper Chiron
#81
qianlou
closed
5 years ago
1
OP_REQUIRES failed at save_restore_v2_ops.cc:184
#80
hlitz
closed
5 years ago
3
Error with basecalling with non-default model
#79
damientully
closed
5 years ago
7
run entry.py call report error
#78
huangnengCSU
closed
5 years ago
1
which function is used to extract raw signal data from fast5
#77
huangnengCSU
closed
5 years ago
0
Attention decoder implementation
#76
nbathreya
closed
5 years ago
1
attention.py
#75
nbathreya
closed
5 years ago
2
Update chiron_input.py
#74
lpryszcz
opened
6 years ago
0
Fixed import for utils.progress
#73
ccoulombe
opened
6 years ago
0
base call failed after training
#72
lfaino
closed
6 years ago
7
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