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haotianteng
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Chiron
A basecaller for Oxford Nanopore Technologies' sequencers
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question about trainning
#70
qhli1
closed
5 years ago
1
Update Test run command
#69
Albbi
opened
6 years ago
0
No sequence in FASTQ output files when basecalling with own model
#68
kehey
closed
6 years ago
4
basecall_group
#67
pcjedi
closed
6 years ago
1
Updae README.md
#66
BioGeek
closed
6 years ago
0
RNA model - no output
#65
jnaitsaada
closed
5 years ago
2
appear at different stage: AttributeError: 'tqdm' object has no attribute 'pos'
#64
Huanle
closed
6 years ago
16
Training Data
#63
pcjedi
closed
6 years ago
5
import mode changed
#62
pcjedi
closed
6 years ago
1
ImportError: No module named chiron
#61
pcjedi
closed
6 years ago
2
Unknown exit perhaps related to tensorflow
#60
rbutleriii
closed
6 years ago
3
AttributeError: 'tqdm' object has no attribute 'pos'
#59
rbutleriii
closed
6 years ago
2
Did you train a BNLSTM model?
#58
qianlou
closed
6 years ago
2
chiron-0.3.tar.gz and Pypi have invalid setup.py
#57
genomematt
closed
6 years ago
1
Parallel run & architecture warnings
#56
apredeus
closed
6 years ago
3
Incorrect package name
#55
cangfengzhe
closed
6 years ago
0
Function getcnnfeature()
#54
qianlou
closed
6 years ago
11
Training issues about new version of Chiron
#53
qianlou
closed
6 years ago
7
TensorFlow Version
#52
qianlou
closed
6 years ago
10
Master still broken on GPU
#51
nmiculinic
closed
6 years ago
2
Multiple fixed (( merging few PRs ))
#50
nmiculinic
closed
6 years ago
2
Small file improvement
#49
nmiculinic
closed
6 years ago
0
Bugfix
#48
nmiculinic
closed
6 years ago
0
Added label files for chiron output
#47
nmiculinic
closed
6 years ago
3
Cannot restore default model
#46
nmiculinic
closed
6 years ago
2
Optimized basecalling speed ~4x
#45
nmiculinic
closed
6 years ago
3
Cannot basecall anything
#44
nmiculinic
closed
6 years ago
1
Various code fixes
#43
nmiculinic
closed
6 years ago
1
chiron_train.py
#42
huangnengCSU
closed
6 years ago
1
Illumina E.coli S10 raw fastq availability
#41
emdyess
closed
6 years ago
1
Issue with chiron_train.py
#39
paru16
closed
6 years ago
1
Issues training a model
#38
paru16
closed
6 years ago
1
Illumina Data Availability
#37
emdyess
closed
6 years ago
3
Code reformat to master
#36
haotianteng
closed
6 years ago
0
training problem
#35
huangnengCSU
closed
6 years ago
10
Ms5 multiple gpu training
#34
haotianteng
closed
6 years ago
0
training and call use different model?
#33
huangnengCSU
closed
6 years ago
2
unable to run 'chiron/entry.py call'
#30
AEDWIP
closed
6 years ago
7
data available
#29
huangnengCSU
closed
6 years ago
2
Chiron base calling error using new model file
#28
varma-k
closed
6 years ago
3
Leeyamkeng ms2 argparse
#27
haotianteng
closed
6 years ago
0
Test Issue
#26
gzarcone
closed
6 years ago
0
Mutable Default Argument in CNN module
#22
mbhall88
closed
6 years ago
0
Deprecate chiron_rcnn_train?
#21
mbhall88
closed
6 years ago
1
NotFoundError when calling
#20
pcjedi
closed
6 years ago
2
Unable to basecall with non-default model
#19
paru16
closed
6 years ago
8
Issues in chiron_label
#18
mbhall88
closed
6 years ago
4
Types mixed up in function parameters
#17
mbhall88
closed
6 years ago
3
Potential bug in write_output
#16
mbhall88
closed
6 years ago
2
Python 3 compatibility
#15
mbhall88
closed
6 years ago
0
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