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juglab
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cryoCARE_pip
PIP package of cryoCARE
BSD 3-Clause "New" or "Revised" License
26
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14
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Output file not found after running training data preparation
#62
Amy1809
closed
2 months ago
2
tensorflow-2.4 vs tensorflow-2.5 ?
#61
EricDeveaud
opened
4 months ago
0
Update README.md :
#60
TomCrey
closed
5 months ago
16
Change the output name to something independent from odd/even?
#59
rdrighetto
opened
5 months ago
3
Fixed bug in mask-parser
#58
bwmr
closed
7 months ago
0
listing more than one tomograms
#57
jychoi0616
closed
9 months ago
0
Dependency conflicts
#56
JadisInka
opened
9 months ago
0
Implementation of Masked Extraction (Issue #54)
#55
bwmr
closed
9 months ago
0
Extract only in sample volume?
#54
bwmr
closed
8 months ago
1
F tensorflow/stream_executor/cuda/cuda_dnn.cc:88] Check failed: narrow == wide (-2128347136 vs. 2166620160)checked narrowing failed; values not equal post-conversion
#53
rnwokonko
closed
9 months ago
4
Artifact in denoised tomogram?
#52
asarnow
opened
1 year ago
1
GPU usage
#51
JulienMaufront
closed
1 year ago
4
documentation?
#50
McHaillet
opened
1 year ago
1
set numpy version compatible with 1.19.2 to fix installation issue
#49
McHaillet
closed
1 year ago
1
json.decoder.JSONDecodeError: Expecting value: line 12 column 16 (char 320)
#48
CleoShen
opened
1 year ago
3
numpy versions in conflict.... tensorflow vs cryoCARE
#47
pconesa
closed
1 year ago
5
Unusual index error in cryoCARE_extract_training_data.py
#46
jmdobbs
opened
1 year ago
1
pinned to TF2.4
#45
alisterburt
opened
1 year ago
1
copy extended header into output file
#44
alisterburt
closed
1 year ago
1
Failing to read tomograms written out by cryoCARE
#43
alisterburt
closed
1 year ago
2
np.bool is depreciated in latest numpy version, this prevents error
#42
EuanPyle
closed
1 year ago
1
Fixing predict json
#41
EuanPyle
closed
1 year ago
1
cryoCARE_predict.py unable to run (cryocare_11)
#40
virlyananda
closed
1 year ago
10
potential fix to issue 38
#39
thorstenwagner
closed
1 year ago
0
Latest version leads to crash during random coordinate sampling
#38
thorstenwagner
closed
1 year ago
2
Prediction step error
#37
zehrea
closed
1 year ago
3
assert even.data.shape[0] > 2 * sample_shape[0] error
#36
zehrea
closed
1 year ago
6
Distributed implementation using mirrored strategy
#35
rdrighetto
closed
1 year ago
9
Fixes in augment() and in validation dataset generation
#34
rdrighetto
closed
1 year ago
2
Fix quality issues
#33
tibuch
closed
1 year ago
2
White density around the denoised membrane
#32
YunjieChang
closed
1 year ago
2
mrc data mode?
#31
Dan-Zed
closed
1 year ago
2
Results from cryoCARE_pip looking worse than cryoCARE_T2T
#30
rdrighetto
closed
1 year ago
16
incorrectly stitched denoised tomogram.mrc
#29
jychoi0616
opened
2 years ago
15
Update sample jsons and README
#28
EuanPyle
closed
1 year ago
2
installation issue?
#27
jychoi0616
opened
2 years ago
4
using tomogram generated by AreTomo
#26
jychoi0616
opened
2 years ago
3
Not running with GPU
#25
YunjieChang
opened
2 years ago
2
Added GPU ID selection capability
#24
EuanPyle
closed
2 years ago
2
Feature Request: GPU ID selection flag for training and prediction
#23
EuanPyle
closed
2 years ago
0
closed issue #14
#22
zehrea
closed
1 year ago
2
Illegal instruction (core dumped) error during preparation step
#21
wjnicol
closed
1 year ago
2
n_tiles not automatically increased
#20
rdrighetto
opened
2 years ago
6
Fix for issue #16
#19
thorstenwagner
closed
2 years ago
0
Merge MPI Dortmund version into this main repository
#18
thorstenwagner
closed
2 years ago
29
Merge cryoCARE_mpido into this main repo
#17
thorstenwagner
closed
2 years ago
1
n_tiles [1,1,1] produces black volume
#16
thorstenwagner
closed
2 years ago
7
Training ERROR (train_config.json)
#15
virlyananda
closed
2 years ago
1
Training step error
#14
zehrea
closed
2 years ago
3
AttributeError: 'DatasetV1Adapter' object has no attribute 'element_spec'
#13
mcianfrocco
closed
2 years ago
13
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