karimn covid-19-transmission issues

karimn / covid-19-transmission

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mobility_report.Rmd error

#52 Junyi-Que opened 3 years ago
4
update

#51 Junyi-Que closed 3 years ago
0
Fix mobility reports to adhere to new results structure

#50 karimn closed 3 years ago
1
Latest results structure

#49 karimn closed 3 years ago
0
Junyi/string

#48 Junyi-Que closed 3 years ago
1
keep this branch up-to-date

#47 Junyi-Que closed 4 years ago
0
Junyi/test

#46 karimn closed 3 years ago
0
Italy does not converge

#45 karimn opened 4 years ago
11
Is it possible to put likelihood or prior on S(t) for particular?

#44 wwiecek opened 4 years ago
0
NL consistently fails with lots of divergence

#43 karimn opened 4 years ago
3
update my branch

#42 Junyi-Que closed 4 years ago
1
Error when adding stringency_index to the model

#41 Junyi-Que opened 4 years ago
6
Karimn/multi singletons

#40 karimn closed 4 years ago
0
Separate overdispersion parameter for each country

#39 karimn closed 4 years ago
0
Fixing use of renv library

#38 karimn closed 4 years ago
0
Main karimn

#37 karimn closed 4 years ago
0
Test model using synthetic data

#36 karimn opened 4 years ago
2
Add prior prediction to reports Rmd

#35 karimn closed 4 years ago
0
Karimn/multi singletons

#34 karimn closed 4 years ago
0
Model needs systematic way to determine the contact rate trend's t*

#33 karimn opened 4 years ago
1
Adding prediction model for R0, in response to time invariant variables

#32 karimn opened 4 years ago
0
France: cases data missing for dates before mid May

#31 karimn closed 4 years ago
6
Batched singletons have a few problems.

#30 karimn opened 4 years ago
16
Tighten prior for ifr_noise (again)

#29 karimn closed 4 years ago
1
Investigating France divergences

#28 karimn opened 4 years ago
15
Investigate why non-informative prior on SD param causes divergent transitions

#27 karimn opened 4 years ago
4
Investigating Sweden divergences/High Rhat/Low ESS

#26 karimn closed 4 years ago
17
Shrinking ifr_noise further

#25 karimn closed 4 years ago
0
Specify results path

#24 karimn closed 4 years ago
0
Use lognormal for IFR noise

#23 karimn closed 4 years ago
0
Karimn/dk investigation/main

#22 karimn closed 4 years ago
0
Denmark (a singleton) with no hierarchical parameters fails catastrophically

#21 karimn opened 4 years ago
11
Add national parameters to results

#20 karimn closed 4 years ago
1
Generating a report from mob_fit alone

#19 wwiecek opened 4 years ago
1
Some non-English language characters cause warnings in report rendering (pdf)

#18 karimn opened 4 years ago
2
Check if using centering parameters an effect on ESS

#17 karimn opened 4 years ago
5
Informative prior for imputed cases

#16 karimn opened 4 years ago
6
Few extra options for run_mob & manual settings for imputed cases

#15 wwiecek closed 4 years ago
3
Investigate weird dip in R(t) plot with >2 deaths epidemic cutoff.

#14 karimn closed 4 years ago
1
Posterior stats for imputed cases per sub region along with the post check of deaths.

#13 karimn closed 4 years ago
2
Parametric trend

#12 karimn opened 4 years ago
9
QR decomposition for faster mobility model. Potentially, we can include all mobility covar instead of averaging over some of them.

#11 karimn opened 4 years ago
1
Mobility plots

#10 karimn closed 4 years ago
0
Investigate why model fails when adding Poland to a number of smaller countries

#9 karimn opened 4 years ago
18
Plots for fitted daily new cases and cumulative incidence

#8 wwiecek opened 4 years ago
1
US data with 600+ counties very slow and not stable

#7 karimn opened 4 years ago
2
Pull Apple Mobility dataset and visually compare with Google Mobility (to use as an extra variable and/or instead of it in some cases?)

#6 karimn opened 4 years ago
0
Convolution process truncation for performance

#5 karimn opened 4 years ago
9
Check how runtime changes adding more countries and subnational units

#4 karimn closed 4 years ago
18
Parallelize transformed parameters block computation

#3 karimn opened 4 years ago
0