kbroman qtl issues - Githubissues

kbroman / qtl

R/qtl: A QTL mapping environment

https://rqtl.org

GNU General Public License v3.0

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issues

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Error handling of pheno.col in cim()

#107 kbroman opened 4 months ago
0
Fix compiler warnings on CRAN

#106 kbroman closed 8 months ago
0
Additional warnings on CRAN

#105 kbroman closed 8 months ago
0
Warning on CRAN

#104 kbroman closed 8 months ago
0
Improper header in pheno dataframe with single column pheno file

#103 fdchevalier closed 10 months ago
3
summary.scanone error with threshold as a vector

#102 kbroman closed 10 months ago
0
addint bug when X chr QTL and missing phenotypes

#101 kbroman closed 1 year ago
2
locationXO and countXO for BCsFt

#100 kbroman closed 1 year ago
0
reduce2grid error

#99 webbchen closed 2 years ago
2
switch.alleles should give error with results of markerlrt

#98 kbroman closed 2 years ago
1
Error: "long vectors (argument 5) are not supported in .C"

#97 jeancarlier34 closed 2 years ago
2
addtoqtl should clear attributes

#96 kbroman closed 2 years ago
1
addcovar arg for cim()

#95 kbroman closed 3 years ago
0
Problem in scantwo permutations

#94 kbroman closed 8 months ago
1
stepwiseqtl has problems with X chr and sex covariate

#93 kbroman closed 3 years ago
1
GH Action check failing on MacOS

#92 kbroman closed 3 years ago
2
pull.rf gives error with duplicate marker names

#91 kbroman closed 3 years ago
0
Change read.cross warning about length of arg alleles

#90 kbroman closed 3 years ago
0
scanone perms with 4-way cross giving all 0's

#89 kbroman closed 8 months ago
3
read.cross with 4-way cross may mess up X chr

#88 kbroman closed 3 years ago
0
read.cross with type=“4way” needs to force sex-specific maps

#87 kbroman closed 3 years ago
2
Download link points to empty file

#86 ellert closed 4 years ago
1
explain format arg in read.cross

#85 kbroman closed 3 years ago
0
How to change x-axis tick labels(chr labels) size?

#84 xiekunwhy closed 4 years ago
1
Fix for permutation issues under linux

#83 DannyArends closed 4 years ago
1
Add plot and summary functions for comparegeno output

#82 kbroman closed 4 years ago
0
Fix use of class() throughout

#81 kbroman closed 4 years ago
0
summary and plot for comparegeno output

#80 kbroman closed 4 years ago
0
have lodint and bayesint give more informative errors

#79 kbroman closed 4 years ago
0
refineqtl can give min(diff(a)) warnings

#78 kbroman closed 4 years ago
0
create a small panel

#77 shaito9 closed 4 years ago
1
mqmscan should give warning about X chromosome

#76 kbroman closed 4 years ago
0
Getting an error in fitqtl

#75 huangl07 closed 5 years ago
3
stepwiseqtl can't handle missing phenotypes + covariates

#74 kbroman closed 4 years ago
3
effectscan and effectplot give inconsistent results

#73 kbroman closed 8 months ago
1
Allow custom colors in geno.image()

#72 kbroman closed 5 years ago
1
Don't give error due to lack of class "map"

#71 kbroman closed 5 years ago
1
add error messages in read.cross.mq.loc

#70 timflutre closed 5 years ago
1
add error message in read.cross.mq.loc

#69 timflutre closed 5 years ago
1
How to keep full chromosome name when my chromosome prefix is "chr" or "Chr"?

#68 xiekunwhy closed 5 years ago
1
R/Qtl error

#67 DivijaGaniga closed 5 years ago
5
Can you add some cross pollinators(CP) population examples in tutorials?

#66 xiekunwhy opened 6 years ago
0
plot.scanone() treat Inf as NA

#65 kbroman closed 5 years ago
0
scanone gives misleading error message when phenotype is not numeric

#64 kbroman closed 6 years ago
1
Better error message from plotLodProfile() with null model

#63 kbroman closed 6 years ago
1
Fix T. Blankers: Permuting all chromosomes in mqmscanfdr

#62 DannyArends closed 6 years ago
0
Remove plot.errorlod, plot.geno, ... functions

#61 kbroman closed 6 years ago
0
Updating the mqmgetmodel help page

#60 DannyArends closed 6 years ago
0
The additive eﬀects of some markers is NA in the bcsft population

#59 jingxianyu closed 7 years ago
5
Make estimate.map=FALSE the default in read.cross

#58 kbroman closed 6 years ago
0