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kfuku52
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amalgkit
RNA-seq data amalgamation for a large-scale evolutionary transcriptomics
BSD 3-Clause "New" or "Revised" License
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curate plot overhaul with ggplot2
#52
kfuku52
closed
2 years ago
8
--batch base
#51
kfuku52
closed
2 years ago
7
layout annotation error?
#50
kfuku52
closed
3 years ago
2
Amalgkit 0.6.0.0 changelog
#49
Hego-CCTB
closed
2 years ago
10
ValueError: Cannot convert non-finite values (NA or inf) to integer
#48
kfuku52
closed
3 years ago
2
AttributeError: 'NoneType' object has no attribute 'decode'
#47
kfuku52
closed
3 years ago
3
KeyError: 0
#46
kfuku52
closed
3 years ago
3
AssertionError: None of expected extensions (.amalgkit.fastq.gz .rename.fastq.gz .fastp.fastq.gz .fastq.gz) found
#45
kfuku52
closed
3 years ago
0
obsoleted options in getfastq
#44
kfuku52
closed
3 years ago
2
consistent colors between curate and csca
#43
kfuku52
closed
1 year ago
5
BUSCO for cstmm
#42
kfuku52
closed
1 year ago
5
minimal test dataset
#41
kfuku52
opened
3 years ago
21
quant overhaul
#40
Hego-CCTB
closed
3 years ago
4
free keyword config
#39
kfuku52
closed
3 years ago
5
change --work_dir
#38
kfuku52
closed
3 years ago
2
cstmm output files
#37
kfuku52
closed
3 years ago
1
curate output files
#36
kfuku52
closed
3 years ago
2
deprecated --threads
#35
kfuku52
closed
3 years ago
3
conda recipe
#34
kfuku52
opened
3 years ago
7
Adding amalgkit sanity
#33
Hego-CCTB
closed
2 years ago
10
FPKM transformation may be incorrect.
#32
kfuku52
closed
2 years ago
11
now rownames in curate outputs
#31
kfuku52
closed
3 years ago
1
cstmm single copy extraction
#30
kfuku52
closed
3 years ago
1
cstmm inputs
#29
kfuku52
closed
3 years ago
4
infer quant --ref and --index
#28
kfuku52
closed
2 years ago
4
integrating private fastq files
#27
kfuku52
closed
3 years ago
4
too stringent outlier removal
#26
kfuku52
closed
2 years ago
5
num_read_fastp
#25
kfuku52
closed
3 years ago
37
curate infiles
#24
kfuku52
closed
3 years ago
1
species-wise merge
#23
kfuku52
closed
3 years ago
4
cstmm R package dependency
#22
kfuku52
closed
3 years ago
1
getfastq download option
#21
kfuku52
closed
3 years ago
17
Metadata assisted quantification (batch mode)
#20
Hego-CCTB
closed
3 years ago
16
raise Exception if returncode is not zero.
#19
kfuku52
closed
3 years ago
3
getfastq and prefetch 2.8.0.
#18
Hego-CCTB
closed
3 years ago
5
add developer
#17
kfuku52
closed
4 years ago
1
amalgkit batch jobs
#16
kfuku52
closed
4 years ago
1
versions
#15
kfuku52
closed
4 years ago
1
simplify subparsers
#14
kfuku52
closed
1 year ago
9
new amalgkit subcommand for cross-species correlation analysis
#13
kfuku52
closed
2 years ago
22
new SVA
#12
kfuku52
opened
4 years ago
46
TMM normalization
#11
kfuku52
closed
1 year ago
41
getfastq --id is currently broken
#10
Hego-CCTB
closed
4 years ago
6
ModuleNotFoundError: No module named 'nltk'
#9
kfuku52
closed
4 years ago
3
restarting with preexisting directory
#8
kfuku52
closed
4 years ago
6
Devel
#7
kfuku52
closed
5 years ago
0
Devel
#6
kfuku52
closed
5 years ago
0
Kfdevel
#5
kfuku52
closed
5 years ago
0
Implement curate
#4
kfuku52
closed
4 years ago
0
Implement quant
#3
kfuku52
closed
4 years ago
26
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