issues
search
kstierhoff
/
estimATM
A tool for planning, execution, analysis, and reporting of CPS biomass from surveys using the acoustic-trawl method (ATM)
Other
2
stars
0
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Add TDR/trawl comparison table for identifying time-zone issues
#117
kstierhoff
opened
6 days ago
0
Deal with Japanese sardine in estimateBiomass (2307RL, 2407RL)
#116
kstierhoff
opened
1 month ago
0
Implemented new pie plots to only plot species present in the catch data
#115
kstierhoff
closed
2 months ago
0
Vectorize code to get vessel nav data from ERDDAP
#114
kstierhoff
opened
2 months ago
0
Update pie charts to include only species present in the data
#113
kstierhoff
closed
2 months ago
1
Edits to 2307RL prior to submitting reportBiomass to RPTS
#112
kstierhoff
closed
3 months ago
0
Revised plot_purseSeine for 2307RL
#111
kstierhoff
closed
3 months ago
0
Finished incorporating edits and suggestions from D. Demer
#110
kstierhoff
closed
3 months ago
0
First round of revisions to draft reportBiomass_230RL
#109
kstierhoff
closed
4 months ago
0
Incorporate deep-water anchovy correction for nearshore acoustic and purse-seine sampling
#108
kstierhoff
closed
4 months ago
0
Updates to Check Transects
#107
alicebeittel
closed
2 months ago
4
Revised biomass estimates, after adjusting nearshore backscatter for anchovy in the SCB
#106
kstierhoff
closed
7 months ago
0
Create interactive data explorer in estimateBiomass that includes nearshore and core area biomass densities, strata, etc.
#105
kstierhoff
opened
8 months ago
0
Merge recent advances in biomass estimation and reporting for 2307RL.
#104
kstierhoff
closed
8 months ago
1
Survey report
#103
jrenfree
closed
8 months ago
0
add a check for isGonadSaved for a certain barcode type
#102
bdschwartzkopf
closed
2 months ago
3
Generalize (U)CTD Processing
#101
jrenfree
opened
9 months ago
0
Update EstimateAcousticKm to include haul and catch data; consider renaming to report_EC-ITA
#100
kstierhoff
closed
8 months ago
1
Additional updates to plot_acoustic_proportion_indiv_combo.R, due to …
#99
kstierhoff
closed
9 months ago
0
Updates to estimateNearshore and processSeine for 2307RL.
#98
kstierhoff
closed
9 months ago
0
Create biomass.dens.plot.lat for estimateNearshore
#97
kstierhoff
closed
8 months ago
1
Change handling of catch data (clf) used to apportion backscatter in the nearshore survey
#96
kstierhoff
closed
9 months ago
1
Various updates to plotTDR, estimateNearshore, and plotSurvey.
#95
kstierhoff
closed
9 months ago
0
add duplicated DNA to checkTrawls
#94
bdschwartzkopf
closed
3 weeks ago
3
Revised processSeine to work with new seine data format
#93
kstierhoff
closed
9 months ago
0
Further revision to processSeine and estimateNearshore for 2307RL
#92
kstierhoff
closed
9 months ago
0
Revised processSeine to be more generic for all surveys. Updates to related scripts.
#91
kstierhoff
closed
9 months ago
0
Compare DNA trays and vials in checkTrawls
#90
kstierhoff
closed
9 months ago
1
Update settings_2307RL.R
#89
jrenfree
closed
10 months ago
0
Updates to 2307RL, mainly to integrate biological data from Lisa Marie and Long Beach Carnage
#88
kstierhoff
closed
10 months ago
0
Minor updates to esimateBiomass for user settings. Added mapNearshore…
#87
kstierhoff
closed
10 months ago
0
Improvements to estimateBiomass for 2307RL. Fixes to handle changes t…
#86
kstierhoff
closed
10 months ago
0
Updates to settings and estimateBiomass for 2307RL. Adjusted leg brea…
#85
kstierhoff
closed
10 months ago
0
Updated plotTDR to increase x-axis ticks and labels for better viewin…
#84
kstierhoff
closed
10 months ago
0
Updates to estimateBiomass and other helper scripts for 2307RL
#83
kstierhoff
closed
10 months ago
0
Updates to plotCTD and get_nav for 2307SH.
#82
kstierhoff
closed
1 year ago
0
Compensate calibration parameters for changes in sound speed
#81
jrenfree
closed
1 year ago
0
Updates to plotSurvey at the beginning of 2307RL
#80
kstierhoff
closed
1 year ago
0
Revisions to reportBiomass_2207RL following review by A. Yau. Improve…
#79
kstierhoff
closed
1 year ago
0
Revisions to reportBiomass_2207RL
#78
kstierhoff
closed
1 year ago
0
Minor updates for processsing seine data for 2207RL; corrected replacement for P…
#77
kstierhoff
closed
1 year ago
0
Create figure showing temporal-spatial overlap of survey vehicles during ATM surveys
#76
kstierhoff
opened
1 year ago
1
Extract revised sardine potential habitat to each trawl haul and cluster
#75
kstierhoff
opened
1 year ago
0
Updated presentBiomass_2207RL
#74
kstierhoff
closed
1 year ago
0
Added waypoints and settings for 1707RL, to allow for CTD/UCTD proces…
#73
kstierhoff
closed
1 year ago
0
Revised reportBiomass_2207RL; version sent to Council
#72
kstierhoff
closed
1 year ago
0
Create estimateHabitatAtTrawlClusters.m
#71
jrenfree
closed
1 year ago
0
Merging major changes from 2207RL biomass estimation analysis
#70
kstierhoff
closed
1 year ago
0
Updating habitat map to use newest model
#69
jrenfree
closed
1 year ago
0
Remove dependencies on deprecated packages
#68
kstierhoff
closed
2 months ago
1
Next