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lhilbert
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EnhancerShoeBox
Molecular Dynamics Simulations of Enhancer-Promoter Interactions in a Model Shoe Box
MIT License
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Missing single shoe box python script
#16
lhilbert
opened
1 month ago
1
Research questions and the 'big picture'
#15
ezingrebe
opened
3 months ago
0
Creating Conda environment for shoebox simulations
#14
ezingrebe
opened
3 months ago
3
check_clean_runs.py script (actin simulations)
#13
ezingrebe
opened
3 months ago
0
Description of the output data files (actin simulations)
#12
ezingrebe
opened
3 months ago
0
Empty output folders in actin simulations
#11
ezingrebe
opened
3 months ago
0
Simulation conditions: Control, LatB etc.
#10
ezingrebe
opened
3 months ago
0
Soft LJ potentials for actin simulations
#9
ezingrebe
opened
3 months ago
4
Contact maps and gene design plots
#8
ezingrebe
opened
3 months ago
0
Gene track figure
#7
ezingrebe
opened
3 months ago
0
Probability of nucleating new actin filaments
#6
ezingrebe
opened
3 months ago
0
Content of the "figures" subfolder - shoebox simulation output
#5
ezingrebe
opened
3 months ago
0
Output files of the single shoebox simulations
#4
ezingrebe
opened
3 months ago
0
Redundant arguments in run_single_shoebox.py script
#3
ezingrebe
opened
3 months ago
2
Arguments to pass for a single shoebox simulation
#2
ezingrebe
opened
3 months ago
1
Soft LJ potentials in shoebox simulations
#1
ezingrebe
opened
3 months ago
7