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mckennalab
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FlashFry
FlashFry: The rapid CRISPR target site characterization tool
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Customizable PAM Sequence for Cpf1 (e.g., TTTV instead of Default TTTN)
#41
2021JohnSheng
opened
1 month ago
0
Re-opening: Bedfile command line argument wgEncodeBroadHmmGm12878HMM.bed doesn't contain both a name and a file #15Jun 25, 2020
#40
nkuperwasser
closed
2 months ago
7
Add option/PAM for Staphylococcus aureus Cas9?
#39
photocyte
opened
6 months ago
0
Designs for SpG Cas enzyme
#38
sri-jumpcode
opened
9 months ago
0
issue parsing T2T-CHM13v2.0 during indexing
#37
tdfair
closed
11 months ago
1
Run with multiple threads/cores?
#36
nkuperwasser
closed
2 months ago
6
Export index data base ?
#35
nkuperwasser
closed
1 year ago
1
CFD score threshold
#34
Huanle
opened
2 years ago
0
Filtering gRNAs for GC% and homopolymers
#33
sri-jumpcode
opened
2 years ago
4
Score: TSV columns off-by-one?
#32
photocyte
closed
2 years ago
3
unexpected result
#31
Huanle
closed
2 years ago
12
off-targets ranking
#30
Huanle
closed
2 years ago
2
guideRNA ranking
#29
Huanle
closed
2 years ago
2
Is random flanking sequence required?
#28
Huanle
closed
2 years ago
4
Whole genome off-target scores
#27
CFB2018
closed
2 years ago
0
Discover module: Key not found: 0 error
#26
sri-jumpcode
closed
2 years ago
3
problem with genome fasta files with chromosome description
#25
eranbio
closed
2 years ago
4
404 to link in paper
#24
nh13
closed
3 years ago
1
Parallelism on HPC clusters
#23
rpep
closed
3 years ago
2
doench2016cfd scoring with spcas9ngg19
#22
tdfair
closed
2 years ago
0
rnafold4j.src.main.java.rnafold4j.RNAFoldAPI does not exist
#21
antonkulaga
closed
3 years ago
1
Best Scoring Matrix for CPF1
#20
melkerdawy
opened
3 years ago
4
Support for Cpf1 and CasΦ
#19
hcph
opened
3 years ago
1
output all off-target score
#18
ryys1122
closed
3 years ago
6
score doench2016ontarget
#17
JaimePrilusky
closed
3 years ago
2
Myc fasta issue in test data
#16
ssreilly
closed
4 years ago
1
Bedfile command line argument wgEncodeBroadHmmGm12878HMM.bed doesn't contain both a name and a file
#15
panxiaoguang
closed
4 years ago
2
Inconsistent Offtarget Reporting
#14
tjs000
closed
4 years ago
4
support for other PAM sequences
#13
gnapham
opened
4 years ago
7
Support Azimuth scoring method for guides
#12
aaronmck
opened
4 years ago
0
bedannotator not functional in v1.9.2
#11
twsaari
closed
5 years ago
2
--includeOTs score option
#10
simone-pignotti
closed
5 years ago
2
Discover command help message
#9
simone-pignotti
closed
5 years ago
7
Input string error
#8
lo2811
closed
5 years ago
2
Java version
#7
genya
closed
5 years ago
3
Update README.md
#6
james-gagnon
closed
6 years ago
1
bedannotator
#5
elijahlowe
closed
6 years ago
3
Fix #3, (formatting error in 'discover')
#4
moritzschaefer
closed
6 years ago
0
"discover" output file field <otCount> format issue
#3
moritzschaefer
closed
6 years ago
1
Too many open files
#2
moritzschaefer
closed
6 years ago
2
Add a Gitter chat badge to README.md
#1
gitter-badger
closed
7 years ago
0