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mikemc
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speedyseq
Speedy versions of phyloseq functions
https://mikemc.github.io/speedyseq/
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Add `bad_empty` argument to `merge_taxa_vec()`
#29
mikemc
opened
4 years ago
0
Package Download Issue
#28
erin-d
closed
4 years ago
3
Add more non-speed enhancements?
#27
mikemc
closed
4 years ago
1
Enable choosing to install stable or development version
#26
mikemc
opened
4 years ago
3
`psmelt()` sometimes returns `Sample` variable as a factor
#25
mikemc
closed
4 years ago
1
`merge_taxa_vec()` fails when taxa are not rows
#24
mikemc
closed
4 years ago
0
Add an example dataset with ASVs and reference sequences
#23
mikemc
opened
4 years ago
0
Can we refactor `tax_glom` and 'merge_taxa_vec` to avoid calling `prune_taxa()`?
#22
mikemc
opened
4 years ago
0
Add stringsAsFactors argument to psmelt
#21
mikemc
closed
4 years ago
1
Create a vignette on taxonomic merging
#20
mikemc
opened
4 years ago
0
Revise documentation for all functions
#19
mikemc
closed
4 years ago
0
Compare distance and clustering methods for tip_glom
#18
mikemc
opened
4 years ago
1
psmelt() triggers .Random.seed creation
#17
mikemc
closed
4 years ago
2
License incompatibility issue
#16
mikemc
closed
4 years ago
0
speedyseq's tax_glom() should work on a plain `taxonomyTable` like phyloseq's
#15
mikemc
closed
4 years ago
1
Create a function to simultaneously merge multiple taxa groups
#14
mikemc
closed
4 years ago
1
Implement phylogenetic aggregation
#13
mikemc
closed
4 years ago
1
Move phyloseq from imports to depends
#12
mikemc
closed
5 years ago
0
tax_glom fails on the lowest taxonomic rank
#11
mikemc
closed
5 years ago
0
Create tests for psmelt and tax_glom
#10
mikemc
closed
4 years ago
3
Look into data.table implementations
#9
mikemc
closed
4 years ago
1
tax_glom: Add initial check for NAs in the otu_table
#8
mikemc
opened
5 years ago
0
Check and document Import strategy
#7
mikemc
opened
5 years ago
0
tax_glom fails when taxa_are_rows = FALSE
#6
mikemc
closed
5 years ago
1
Compare the output of different psmelt versions
#5
mikemc
closed
5 years ago
2
tax_glom produces different results from phyloseq's tax_glom
#4
mikemc
closed
5 years ago
0
Add a README.Rmd showing how to use the package
#3
mikemc
closed
5 years ago
0
Add plotting functions that depend on `psmelt`
#2
mikemc
closed
5 years ago
0
Reimplement tip_glom
#1
mikemc
closed
4 years ago
1
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