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monarch-initiative
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monarch-ingest
Data ingest application for Monarch Initiative knowledge graph using Koza
https://monarchinitiative.org
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Add missing function call
#602
ptgolden
opened
1 week ago
0
Updates phenio.db association population to gene & disease phenotype associations
#601
kevinschaper
opened
2 weeks ago
0
Delete incomplete cached file during ingest download?
#600
ptgolden
closed
2 weeks ago
1
Populate type for HGNC & Alliance gene nodes
#599
kevinschaper
closed
3 weeks ago
1
Removed taxon-labels map requirement from hgnc gene ingest.
#598
DnlRKorn
closed
1 month ago
2
Ingest for HGNC Gene unnecessarily needs taxon-label map
#597
DnlRKorn
closed
1 month ago
0
Monarch KG neo4j dump not working 2023 10 17
#596
kcortes133
opened
1 month ago
0
Repair zeroes in phenotype.hpoa, update PKS
#595
kevinschaper
closed
1 month ago
0
Create delta between ORION and MONDO
#594
DnlRKorn
opened
2 months ago
1
Get output from modular ingests before merge in Jenkins job
#593
glass-ships
opened
3 months ago
1
Mondo derived g2d's should not be presented on the website as "associations"
#592
matentzn
opened
3 months ago
0
Use duckdb for jsonl conversion to fit into memory
#591
kevinschaper
closed
3 months ago
0
Add modular genotype & variant ingests
#590
kevinschaper
closed
3 months ago
1
linkml solr upgrade
#589
kevinschaper
closed
4 months ago
0
Create exploded association exports that traverses closures
#588
kevinschaper
closed
3 months ago
1
Update Koza, imports, and tests. Fix lint/format make targets
#587
glass-ships
closed
4 months ago
0
notebook experimenting on using duckdb to merge a kg
#586
kevinschaper
opened
5 months ago
0
Create cookiecutter template for modular koza ingests
#585
glass-ships
closed
4 months ago
0
Add knowledge level & agent type, plus constraint improvements
#584
kevinschaper
closed
5 months ago
0
cat-merge update
#583
kevinschaper
closed
6 months ago
0
Use systematic id for empty gene names
#582
glass-ships
closed
6 months ago
0
add step to upload index.html generated by multi-indexer
#581
glass-ships
closed
6 months ago
1
Fix upload and index to KGHub
#580
glass-ships
closed
6 months ago
11
Use sudo when downloading solr.tar.gz onto the solr dev instance
#579
kevinschaper
closed
6 months ago
0
Restore onset_qualifier, plus HPOA DB_reference -> publication and doc cleanup
#578
kevinschaper
closed
6 months ago
0
Treats refactor / Biolink 4.1.x update
#577
kevinschaper
closed
6 months ago
0
Add object taxon info for gene to gene association export
#576
kevinschaper
closed
6 months ago
0
Biolink 4.1.x upgrade / treats refactor
#575
kevinschaper
closed
6 months ago
0
Fix release script not running in jenkins job
#574
glass-ships
closed
6 months ago
0
Upload data to archive bucket on release
#573
glass-ships
closed
6 months ago
0
fix write-metadata params in Jenkinsfiles
#572
kevinschaper
closed
7 months ago
0
Updates to latest biolink, adds frequency quantifier fields to hpoa d2p
#571
kevinschaper
closed
7 months ago
0
Upload/Update dev solr service
#570
glass-ships
closed
7 months ago
0
Upload/update Solr in Jenkins pipeline
#569
glass-ships
closed
7 months ago
0
Update closurizer to 0.5.1
#568
kevinschaper
closed
7 months ago
0
Add denormalized node output file produced by closurizer with has_phenotype expansions and load it into Solr
#567
kevinschaper
closed
7 months ago
0
Add script to create github release via jenkins job
#566
glass-ships
closed
7 months ago
0
Adds copy-field declarations for the full_name field which stores the long name of genes
#565
kevinschaper
closed
8 months ago
0
Adds lowercase keyword grounding field to Solr entity collection
#564
kevinschaper
closed
8 months ago
0
Include human gene expression from bGee
#563
kevinschaper
closed
8 months ago
1
Download mappings from data.mi.org
#562
glass-ships
closed
8 months ago
0
Write data and package versions to data/output
#561
glass-ships
closed
7 months ago
5
Bump jinja2 from 3.1.2 to 3.1.3
#560
dependabot[bot]
closed
8 months ago
1
Rename GOA to GO
#559
glass-ships
closed
8 months ago
0
Interactions Cleanup
#558
kevinschaper
closed
8 months ago
0
Update the gene mapping file to match the new name with the .sssom.tsv suffix.
#557
kevinschaper
closed
9 months ago
0
Update Reactome ingests to use `Reactome` as a prefix rather than `REACT`
#556
kevinschaper
closed
9 months ago
0
Redirect _all_ mapping dependencies to Monarch Mapping Commons
#555
matentzn
closed
8 months ago
0
Update the phenio.db term association population to point to db files in output subdir
#554
kevinschaper
closed
9 months ago
0
One potential solution to resolve Monarch-App issue#465
#553
RichardBruskiewich
closed
9 months ago
1
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