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nanoporetech
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pore-c
Pore-C support
Mozilla Public License 2.0
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Add deprecation notice
#62
eharr
closed
1 year ago
0
Bump certifi from 2021.5.30 to 2022.12.7 in /requirements
#61
dependabot[bot]
opened
1 year ago
0
installation
#60
SungUk
opened
2 years ago
0
Run pore-c from PC
#59
Oksanak22
opened
2 years ago
0
create_hic error WARNING: sun.reflect.Reflection.getCallerClass
#58
OZTaekOppa
opened
2 years ago
0
Bump distributed from 2.30.1 to 2021.10.0 in /requirements
#57
dependabot[bot]
opened
2 years ago
0
Bump distributed from 2.30.1 to 2021.10.0
#56
dependabot[bot]
opened
2 years ago
0
Bump numpy from 1.19.5 to 1.22.0
#55
dependabot[bot]
opened
2 years ago
0
Bump numpy from 1.19.5 to 1.22.0 in /requirements
#54
dependabot[bot]
opened
2 years ago
0
graph-based concatemer alignment
#53
callumparr
opened
2 years ago
3
Installation & module error
#52
OZTaekOppa
opened
2 years ago
3
error message during conversion to cool format
#51
erbon7
opened
2 years ago
0
Down-weighting pairs like SPRITE
#50
jessakay
opened
2 years ago
0
Bump dask from 2.30.0 to 2021.10.0
#49
dependabot[bot]
opened
3 years ago
0
Bump dask from 2.30.0 to 2021.10.0 in /requirements
#48
dependabot[bot]
opened
3 years ago
0
Docs
#47
eharr
closed
3 years ago
0
Create python-package-conda.yml
#46
eharr
opened
3 years ago
0
nanopolish call-methylation fails with many bad fast5s
#45
will-NYGC
closed
3 years ago
3
mnd file
#44
taskina-alena
opened
3 years ago
1
Minimum number of contacts for pore-C analysis
#43
antarikshtyagi
closed
3 years ago
1
Develop
#41
eharr
closed
3 years ago
0
Bio.Alphabet removed
#40
natforsdick
closed
3 years ago
3
multi-way contacts file
#39
erbon7
opened
4 years ago
3
pore_c pairs to-matrix fails
#38
bistace
closed
4 years ago
1
Questions when exploring the align_table and pair files.
#37
LIZW2019
opened
4 years ago
2
added mean qscore calculation to fastq parquet generation
#36
proinde
closed
4 years ago
0
Merging Salsa beds from multiple experiments
#35
claumer
opened
4 years ago
3
Python TypeError in refgenome catalog step
#34
claumer
closed
4 years ago
3
parquet format
#33
skoren
closed
4 years ago
2
Use pyranges for overlap logic
#32
eharr
opened
4 years ago
3
Why use ncls + pandas instead of pyranges?
#31
endrebak
closed
4 years ago
3
Update README to include download links
#30
eharr
closed
5 years ago
0
Thread ks
#29
proinde
closed
5 years ago
0
Prerefactor additions
#28
proinde
closed
5 years ago
0
Adjacency fix
#27
proinde
closed
5 years ago
0
Added a way of storing information about which fragments are non-adja…
#26
proinde
closed
5 years ago
0
Add fixed-width restriction digest strategy
#25
eharr
closed
5 years ago
0
reference contigs without restriction sites cause fragment_id skipping
#24
proinde
closed
5 years ago
0
Frag dag
#23
proinde
closed
5 years ago
0
Binning
#22
proinde
closed
5 years ago
0
tie breaking
#21
proinde
closed
5 years ago
0
Bulk bed overlaps
#20
proinde
closed
5 years ago
0
distance distribution and matrix correlation
#19
proinde
closed
5 years ago
0
Contact logging
#18
proinde
closed
5 years ago
0
Contact logging
#17
proinde
closed
5 years ago
0
Contact logging
#16
proinde
closed
5 years ago
0
Ensure that last fragment is added to FragmentMap
#15
eharr
closed
5 years ago
0
reference bed lacks last fragment
#14
proinde
closed
5 years ago
1
"method" option is never referenced
#13
proinde
closed
5 years ago
0
Prevent interval tree from seeing alignments that are negative or zer…
#12
proinde
closed
5 years ago
0
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