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neksa
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mutagene
Python library and package for mutational analysis
https://www.ncbi.nlm.nih.gov/projects/mutagene/
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add support for ranking silent mutations given MAF (e.g. L61=)
#68
neksa
closed
2 years ago
0
uninstall LFS, upgrade pyvcf
#67
neksa
closed
2 years ago
0
PR 0.9.1.0
#66
neksa
closed
3 years ago
0
Bump cryptography from 3.2 to 3.3.2
#65
dependabot[bot]
closed
3 years ago
0
KeyError: 'GCTGA'
#64
yunhuip
closed
3 years ago
4
Ranking
#63
anna-panchenko
opened
3 years ago
1
Motif search
#62
anna-panchenko
opened
3 years ago
0
'Unexpected value of transcript_strand in MAF file'
#61
yunhuip
opened
3 years ago
0
Hotfix/cli test fetch
#60
shandy79
closed
3 years ago
0
Hotfix/cli test fetch
#59
shandy79
closed
3 years ago
0
Hotfix/cli test fetch
#58
shandy79
closed
3 years ago
1
Feature/51 remove rank vcf
#57
shandy79
closed
3 years ago
0
Ranking, can not override profile
#56
anna-panchenko
closed
3 years ago
3
provides no list of cohorts
#55
anna-panchenko
opened
3 years ago
1
non-informative error message
#54
anna-panchenko
closed
3 years ago
3
Rank/without cohort
#53
neksa
closed
3 years ago
0
Bump cryptography from 2.9 to 3.2
#52
dependabot[bot]
closed
3 years ago
0
Do not show VCF MAF format option in rank module
#51
neksa
closed
3 years ago
1
Redesign rank subpackage
#50
neksa
closed
3 years ago
1
Package documentation
#49
neksa
opened
4 years ago
0
Gene transcripts
#48
anna-panchenko
opened
4 years ago
0
Feature/cli tests
#47
shandy79
closed
4 years ago
3
Updates to motif_doc.rst
#46
shandy79
closed
4 years ago
1
Create log file with input parameters
#45
neksa
opened
4 years ago
0
Issues with motif_doc.rst
#44
shandy79
closed
4 years ago
3
Feature/cli tests
#43
shandy79
closed
4 years ago
0
Revert "Feature/cli tests"
#42
shandy79
closed
4 years ago
0
Feature/cli tests
#41
shandy79
closed
4 years ago
0
webserver error
#40
anna-panchenko
opened
4 years ago
0
web server and package
#39
anna-panchenko
closed
4 years ago
1
ambiguous error message
#38
anna-panchenko
closed
4 years ago
3
--help for "signature identify"
#37
anna-panchenko
opened
4 years ago
0
signature identify documentation and help
#36
anna-panchenko
closed
4 years ago
1
different output with and w/o bootstrap
#35
anna-panchenko
closed
4 years ago
0
mutagene signature identify
#34
anna-panchenko
closed
4 years ago
0
motif search
#33
anna-panchenko
closed
4 years ago
1
arguments in motif search
#32
anna-panchenko
closed
4 years ago
1
motif search command line
#31
anna-panchenko
closed
4 years ago
0
#29 CircleCI integration enhancements
#30
shandy79
closed
4 years ago
1
Explore CircleCI integration
#29
shandy79
closed
4 years ago
1
Genome assembly does not match
#28
anna-panchenko
opened
4 years ago
0
Standard output
#27
fhernandezl
closed
4 years ago
0
last pull request
#26
carolinecunningham
closed
5 years ago
0
new PR
#25
carolinecunningham
closed
5 years ago
0
New PR
#24
carolinecunningham
closed
5 years ago
0
added coverage of motifs source code
#23
carolinecunningham
closed
5 years ago
0
updates to enrich, odds ratio, & stats calls
#22
carolinecunningham
closed
5 years ago
0
code refactoring
#21
carolinecunningham
closed
5 years ago
0
made enrichment not rely on mutually-excl counts, added OR
#20
carolinecunningham
closed
5 years ago
2
new pull request
#19
carolinecunningham
closed
5 years ago
0
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