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nf-core
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quantms
Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
https://nf-co.re/quantms
MIT License
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Important! Template update for nf-core/tools v2.5
#52
nf-core-bot
closed
2 years ago
2
remove redundant config import
#51
daichengxin
closed
2 years ago
1
Transfer all issues into the nf-core/quantms repo
#50
fabianegli
closed
2 years ago
1
Config loaded twice
#49
fabianegli
closed
1 year ago
0
[Release] 1.1
#48
ypriverol
closed
1 year ago
16
Major changes in the quantms package
#47
ypriverol
closed
2 years ago
4
test configs
#46
CaroAMN
closed
2 years ago
1
Add mimetype to input parameter in schema
#45
drpatelh
closed
2 years ago
4
Important! Template update for nf-core/tools v2.4
#44
nf-core-bot
closed
2 years ago
1
Clarify/Unify exported scores
#43
jpfeuffer
closed
7 months ago
1
[BLOCKER] msstats pdfs empty
#42
jpfeuffer
closed
2 years ago
6
Add more QC metrics for pmultiQC and use mzQC files
#41
jpfeuffer
opened
2 years ago
1
Create database index first for search engines that support it
#40
jpfeuffer
closed
7 months ago
0
Real full size data sets for AWS full tests
#39
jpfeuffer
closed
7 months ago
0
Add samplesheet schema for our SDRF input
#38
jpfeuffer
opened
2 years ago
0
Add tower.yml to specify which reports could be visualized in nf-tower
#37
jpfeuffer
opened
2 years ago
0
[Testing] Add test profile as alias to test_lfq
#36
jpfeuffer
closed
2 years ago
1
[Feature] New release cycle for 1.1
#35
jpfeuffer
closed
2 years ago
1
Update CHANGELOG.md for Release 1.0
#34
jpfeuffer
closed
2 years ago
2
[FIX] specify container for bash-only modules for AWS
#33
jpfeuffer
closed
2 years ago
1
remove github vars from AWS action
#32
jpfeuffer
closed
2 years ago
2
Merge minor changes for release from dev to master
#31
jpfeuffer
closed
2 years ago
3
Retry TRFP independent of exit code
#30
jpfeuffer
closed
2 years ago
1
Fixes for 1.0 for AWS
#29
jpfeuffer
closed
2 years ago
2
[FIX] AWS and conda (#163)
#28
jpfeuffer
closed
2 years ago
1
Feature request: output search results after protein inference and filtering
#27
hendrikweisser
opened
2 years ago
1
Add tests for Conda
#26
jpfeuffer
closed
2 years ago
0
Msgf not working on AWS!
#25
jpfeuffer
closed
2 years ago
3
Thermorawfileparser must not use hard links on AWS!
#24
jpfeuffer
closed
2 years ago
11
AWS tests completely failing
#23
jpfeuffer
closed
2 years ago
1
[Feat] tee Logging of processes into stdout and file
#22
jpfeuffer
closed
2 years ago
2
Misspelled "search_engines" argument runs workflow without search
#21
hendrikweisser
closed
7 months ago
1
[Hotfix] Amend to Release 1.0 before tagging/releasing
#20
jpfeuffer
closed
2 years ago
4
Problems with OpenMS-style experimental design input
#19
hendrikweisser
closed
2 years ago
23
sync overview graph
#18
jpfeuffer
closed
2 years ago
2
Small bug fixing
#17
ypriverol
closed
2 years ago
2
print diann version
#16
daichengxin
closed
2 years ago
2
fixed
#15
daichengxin
closed
2 years ago
2
Fixes
#14
jpfeuffer
closed
2 years ago
1
[Release] 1.0
#13
jpfeuffer
closed
2 years ago
12
update dev from bigbio
#12
jpfeuffer
closed
2 years ago
1
Template update from 2.3 to 2.3.2
#11
ypriverol
closed
2 years ago
1
Important! Template update for nf-core/tools v2.3.2
#10
nf-core-bot
closed
2 years ago
2
Important! Template update for nf-core/tools v2.3.1
#9
nf-core-bot
closed
2 years ago
0
dia file path changed
#8
ypriverol
closed
2 years ago
2
First release PR - 1.0
#7
ypriverol
closed
2 years ago
1
changelog added - release
#6
ypriverol
closed
2 years ago
2
PR for first release of quantms
#5
ypriverol
closed
2 years ago
5
documentation updated
#4
ypriverol
closed
2 years ago
2
Important! Template update for nf-core/tools v2.3
#3
nf-core-bot
closed
2 years ago
1
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