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nhochberger
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NuFi
Im Rahmen einer Studienarbeit entwickeltes Tool zum Detektieren von Objekten in Zellkernen.
Apache License 2.0
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Timestamp for results
#54
nhochberger
closed
9 years ago
0
Make minimum circularity of nucleoli configurable
#53
nhochberger
closed
9 years ago
0
Make fallback to center of nucleus configurable
#52
nhochberger
opened
9 years ago
0
In "shrinkRois(...)" ROIs are enlarged instead of shrinked
#51
nhochberger
closed
9 years ago
0
Use getPolygon instead of getConvexHull with ROIs
#50
nhochberger
closed
9 years ago
0
Save and analyze channel3 image with corrected brightness
#49
nhochberger
opened
9 years ago
0
Delete surrounding of ROIs for analysis
#48
nhochberger
closed
9 years ago
1
Deriche-Canny-Method target detection
#47
nhochberger
opened
9 years ago
0
Targets outside ROIs
#46
nhochberger
closed
9 years ago
1
Introduction
#45
nhochberger
opened
9 years ago
0
Explain Hough transformation
#44
nhochberger
opened
9 years ago
0
Explain thresholding and how threshold is found
#43
nhochberger
opened
9 years ago
0
Provide size of all nucleoli and mean value
#42
nhochberger
closed
9 years ago
0
Provide number of too large/small nucleoli
#41
nhochberger
closed
9 years ago
0
Provide size of all nuclei and mean value
#40
nhochberger
closed
9 years ago
0
Provide number of too large/small nuclei
#39
nhochberger
opened
9 years ago
0
Nuclei/nucleoli statistics
#38
nhochberger
closed
9 years ago
0
Convert distance measurement to elaborate analysis
#37
nhochberger
closed
9 years ago
0
Distance measurement
#36
nhochberger
closed
9 years ago
0
Changes to image processing
#35
nhochberger
opened
9 years ago
1
Make expected size of nulei configurable
#34
nhochberger
closed
9 years ago
1
Numerate ROIs
#33
nhochberger
closed
9 years ago
0
Nucleoli targets are not properly numerated
#32
nhochberger
closed
9 years ago
0
Save result as image
#31
nhochberger
closed
10 years ago
0
Perform in-depth analysis on "empty" nuclei
#30
nhochberger
closed
10 years ago
1
Targets for empty nuclei
#29
nhochberger
closed
10 years ago
0
Use only the largest nucleolus in every nucleus
#28
nhochberger
closed
10 years ago
0
Do not use center of mass but center of area
#27
nhochberger
closed
10 years ago
0
Bulkmode
#26
nhochberger
opened
10 years ago
0
Measure distance between nucleoli and center of nucleus
#25
nhochberger
closed
9 years ago
2
Minimum distance between nucleus edge and nucleoli
#24
nhochberger
closed
9 years ago
0
Target management change
#23
nhochberger
closed
10 years ago
0
Include nuclei that are close to the edges into analysis
#22
nhochberger
closed
10 years ago
1
Make size of Nucleoli configurable
#21
nhochberger
closed
10 years ago
0
How to determine threshold for maximum finder
#20
nhochberger
closed
10 years ago
1
Visualizer improvement
#19
nhochberger
closed
10 years ago
0
Mitte der Nucleoli als Ziel
#18
nhochberger
closed
10 years ago
1
Paper senden
#17
nhochberger
closed
9 years ago
0
Kanalbezeichnung irgendwo im Bildnamen
#16
nhochberger
closed
10 years ago
0
targets-Datei muss Timestamp aus dem Bildnamen im Dateinamen haben
#15
nhochberger
closed
10 years ago
1
Refactoring of NuFiConfiguration
#14
nhochberger
closed
9 years ago
0
Validate data in configuration file
#13
nhochberger
closed
10 years ago
0
Validate configuration file
#12
nhochberger
closed
10 years ago
0
Analysis of large ROIs
#11
nhochberger
opened
10 years ago
1
Visualizer requirements
#10
nhochberger
closed
10 years ago
1
Timing for image analysis
#9
nhochberger
closed
10 years ago
0
Mock implementation of image analysis
#8
nhochberger
closed
10 years ago
0
Formatter for results
#7
nhochberger
closed
10 years ago
0
Serialisation of results
#6
nhochberger
closed
10 years ago
0
Logging services
#5
nhochberger
closed
10 years ago
0
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