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nimble-dev
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nimble
The base NIMBLE package for R
http://R-nimble.org
BSD 3-Clause "New" or "Revised" License
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WIP: add Polya Gamma sampler
#1439
paciorek
closed
4 months ago
24
tweak BFGS call
#1438
perrydv
closed
4 months ago
3
add option for ASIS sampling to RW sampler?
#1437
paciorek
closed
4 months ago
13
Remove compareMCMCs
#1436
perrydv
closed
4 months ago
5
improve efficiency of `makeModelDerivsInfo` and `makeOutputNodes`
#1435
paciorek
closed
4 months ago
3
Revise user manual for 1.2.0
#1434
perrydv
closed
4 months ago
4
add `digits` argument to `nimPrint`?
#1433
paciorek
closed
4 months ago
1
Check on VECTOR_ELT intermittent errors
#1432
perrydv
closed
5 months ago
2
severe inefficiency and memory explosion for certain models in `makeModelDerivsInfo` because `isStoch` applied to node scalar components
#1431
paciorek
closed
4 months ago
7
protect gradient methods in nimOptim C++ from when the user-provided fn or gr modifies the input vector.
#1430
perrydv
closed
5 months ago
1
new argument to disable initializeModel in mcmc$run method
#1429
danielturek
closed
6 months ago
0
rewrite buildMCEM and associated tools and documentation
#1428
perrydv
closed
3 months ago
21
parameterTransform operates correctly for zero nodes
#1427
danielturek
closed
5 months ago
1
Can Laplace's getNodeNamesVec return mismatched length?
#1426
perrydv
opened
6 months ago
11
size-related compilation issues when adding scalar to vector to matrix in model
#1425
paciorek
closed
2 months ago
3
Strange AD behavior for custom distributions involving dbinom for scalar and vector inputs
#1424
weizhangstats
closed
3 months ago
4
new test-ADlaplace error in use of `chm_factor_ldetL2` via `lmer`
#1423
paciorek
opened
6 months ago
2
modelValuesAccessorVector setup template matches modelValues
#1422
danielturek
closed
5 months ago
4
added check for discrete target nodes in RW_block sampler
#1421
danielturek
closed
7 months ago
0
update igraph calls for new syntax
#1420
perrydv
closed
5 months ago
0
update igraph calls
#1419
perrydv
closed
5 months ago
0
cannot find -lnimble_x64 collect2.exe (for compiling dynamicRegistrations_02_20_15_53_59.cpp)
#1418
mortamini
closed
4 months ago
1
modify ordering of includes in C++ code to address Red Hat Linux compilation failures
#1417
paciorek
closed
5 months ago
0
partial matching warning if option warnPartialMatchDollar is TRUE
#1416
sebdalgarno
closed
4 months ago
1
failure to install under Red Hat Enterprise Linux
#1415
paciorek
closed
4 months ago
1
save userEnv in modelDef object
#1414
danielturek
closed
4 months ago
10
use `inherits` in `nf_preProcessMemberDataObj`
#1413
paciorek
closed
5 months ago
0
How does MCMC handle missing values in the data when I run the nimble package?
#1412
Arizazcq97
closed
8 months ago
2
Please update Eigen headers or at least disable Altivec for macOS until Eigen updated
#1411
barracuda156
opened
8 months ago
11
warning with R CMD check under windows
#1410
paciorek
closed
4 months ago
1
bug in conjugacy processing for a stickbreaking case
#1409
paciorek
closed
4 months ago
1
cleanup unused variable and typedef warnings
#1408
perrydv
closed
8 months ago
3
Supports `addSampler(..., allowData = TRUE)`
#1407
danielturek
closed
8 months ago
3
Update to Eigen 3.4.0
#1406
perrydv
closed
8 months ago
11
ensure stoch_ind_set is not used in a nested way
#1405
perrydv
closed
8 months ago
1
avoid wrapping CRP cluster parameters when joint sampling
#1404
paciorek
closed
8 months ago
0
Failing LKJ test model when buildDerivs = TRUE
#1403
danielturek
closed
8 months ago
2
handle predictive nodes in sampler_CRP
#1402
paciorek
closed
8 months ago
6
stop instead of simply printing on run-time size errors.
#1401
perrydv
closed
8 months ago
2
warning in CAR_normal sampler when zero_mean causes a problem
#1400
danielturek
closed
8 months ago
0
warnings about set but not used intermediate variables on Apple Silicon (M2)
#1399
paciorek
closed
8 months ago
1
How to do truncation with automatic derivatives?
#1398
pehkawn
opened
8 months ago
2
`nimbleHMC()` error: "must set `buildDerivs = TRUE` when building model" when the model is created using `readBUGSmodel()`
#1397
pehkawn
closed
4 months ago
3
Fix the recycling-rule bug in specific cases of pow_int
#1396
perrydv
closed
8 months ago
3
C++ problem with compound calls to recycling-rule code using function arguments
#1395
perrydv
closed
8 months ago
0
implement `is.na` and `is.nan` as vectorized operations mimicing R behavior
#1394
paciorek
closed
8 months ago
6
add `--preclean` to `R CMD SHLIB`
#1393
paciorek
closed
8 months ago
0
change `|` to `||` to avoid error on M2 Mac
#1392
paciorek
closed
8 months ago
1
warnings about unused typdefs on M2 Mac
#1391
paciorek
closed
8 months ago
1
enable AD for CAR models
#1390
paciorek
closed
8 months ago
7
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