nish-kishore sirfunctions issues

nish-kishore / sirfunctions

Key functions used by the SIR team

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🐛 f.stool.ad.01() calculates for NAs

#111 mcuadera opened 3 days ago
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🐛 f.metadata.tag() does not use `raw.data$metadata$download_time` when `time_tag` is `NA`

#110 mcuadera opened 3 days ago
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🐛 .data references in tidyselect operations

#109 mcuadera closed 5 days ago
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🐛 .data references in select() statements and missing library calls in generate_dr_ppt2()

#108 mcuadera closed 5 days ago
1
Add counts to national timeliness plot

#107 awilkinson252 opened 6 days ago
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sirfunctions v1.1

#106 mcuadera closed 1 week ago
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101 afpepi in get all polio data contains na

#105 Heaghneyn closed 1 week ago
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❇️ additional subinterval data calculated for WHO lab data

#104 mcuadera closed 1 week ago
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❇️ Additional intervals for timeliness graphs

#103 mcuadera opened 1 week ago
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sirfunction documentation update

#102 mcuadera closed 1 week ago
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🐛 afp.epi in get_all_polio_data() contains NA

#101 Heaghneyn closed 1 week ago
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99-npafp-func-hotfix

#100 mcuadera closed 2 weeks ago
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NPAFP rate not excluding cases above 15 years of age in the calculation of the NPAFP Rate

#99 mcuadera closed 1 week ago
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Desk Review Modularization Code

#98 mcuadera closed 3 weeks ago
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Fx to update a local rds with the new download form `get_all_polio_data()`

#97 nish-kishore opened 1 month ago
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check for duplicates and deduplicate when called get_all_polio_data()

#96 mcuadera opened 1 month ago
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🐛 f.stool.ad.01() NA for geography without AFP cases

#95 mcuadera closed 3 weeks ago
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Geography without AFP cases have a stool adequacy of 0. Should be NA

#94 mcuadera closed 1 week ago
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load_sp fun updated

#93 mcuadera closed 1 month ago
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Add libraries used in the desk review to DESCRIPTION file of sirfunctions

#92 mcuadera closed 1 week ago
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Function to do a quick evaluation of ES sites

#91 nish-kishore opened 2 months ago
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output of extract_country_data() should contain es data as well

#90 mcuadera closed 2 months ago
1
f.npafp.rate.01() does not run using dist.pop() from country data

#89 mcuadera closed 3 months ago
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init_dr() to also filter start and end dates of the desk review

#88 mcuadera closed 2 months ago
1
:sparkle: add feature to send html content

#87 nish-kishore closed 3 months ago
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Modify get_azure_storage_connection to work locally and on EDAV

#86 nish-kishore opened 3 months ago
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Function to evaluate the geospatial database

#85 nish-kishore opened 3 months ago
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:sparkle: created mo.R

#84 nish-kishore closed 4 months ago
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intro to dev for mo

#83 nish-kishore closed 4 months ago
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51 integrate tests for simple functions

#82 mcuadera closed 3 months ago
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80 additional color schemes

#81 mcuadera closed 3 months ago
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additional color schemes used in desk reviews

#80 mcuadera closed 3 months ago
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71 remove spatial requirement extract_country_data()

#79 mcuadera closed 3 months ago
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Add function to visualize spread of emergences

#78 nish-kishore closed 1 month ago
1
all to all2

#77 mcuadera closed 3 months ago
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75 extract country data fixing raw.data

#76 mcuadera closed 4 months ago
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extract_country_data() interally uses raw.data instead of .raw.data

#75 mcuadera closed 4 months ago
2
Flagging that extract_country_data() uses cdc.classification.all

#74 mcuadera closed 4 months ago
1
extract_country_data() - handling of spatial file errors

#73 mcuadera closed 3 months ago
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❇️ function to automate creation of emergence specific spread gifs

#72 nish-kishore closed 2 weeks ago
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extract_country_data() should not require attaching spatial files

#71 mcuadera closed 3 months ago
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❇️ Add csv flexibility to edav_io

#70 Heaghneyn opened 4 months ago
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extract_country_data() should also include country and prov population data

#69 mcuadera closed 3 months ago
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f.npafp.rate.01() uses cdc.classification.all

#68 mcuadera closed 3 months ago
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:bug: need to check if token list exists before evaluating it for send_outlook_email

#67 nish-kishore opened 4 months ago
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64 bad data value not being computed

#66 mcuadera closed 4 months ago
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Automatically compress images when writing out plots

#65 nish-kishore opened 4 months ago
1
f.stool.ad.01 patch

#64 mcuadera closed 4 months ago
1
Bad data value not being computed

#63 lizkrowlucal closed 4 months ago
1
❇️ Integrate RedCAP syncing for research

#62 Heaghneyn opened 4 months ago
0