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Ten Simple Rules for Writing Dockerfiles for Reproducible Data Science

https://doi.org/10.1371/journal.pcbi.1008316

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Related work

#107 nuest opened 1 year ago
2
Comments about Rule 1 "Use available tools"

#106 sdettmer opened 2 years ago
1
comments about rule 10 "Regularly use and rebuild containers"

#105 sdettmer opened 2 years ago
9
comments about rule 9 "Order the instructions"

#104 sdettmer opened 2 years ago
1
comments about rule 8: "Make the image one-click runnable"

#103 sdettmer opened 2 years ago
5
comments about rule 7: "Mount dataset at run time"

#102 sdettmer opened 2 years ago
9
comment about rule 6: "Use version control"

#101 sdettmer opened 2 years ago
3
comments about rule 5: "Specify software versions"

#100 sdettmer opened 2 years ago
4
comment about rule 4: "Document within the dockerfile"

#99 sdettmer opened 2 years ago
3
comment about rule 3: "Format for clarity"

#98 sdettmer opened 2 years ago
6
Comments about rule 2: "Build upon existing images"

#97 sdettmer opened 2 years ago
3
(Comment) Rule 0 - Don't use docker

#96 sdettmer opened 2 years ago
6
Build current master PDF with GitHub action, not with Travis

#95 nuest opened 3 years ago
1
Remove DOIs to OSF preprint

#94 bdevans closed 4 years ago
2
Remove contradictory analogy

#93 bdevans closed 4 years ago
4
New projects, packages, ideas for follow ups, new revisions, etc.

#92 nuest opened 4 years ago
10
Content beyond the paper

#91 nuest opened 4 years ago
1
Add license to figure and tweak borders

#90 bdevans closed 4 years ago
3
Update readme

#89 bdevans closed 4 years ago
1
Th final comments

#88 psychemedia closed 4 years ago
1
Publish a bookdown rendering

#87 nuest opened 4 years ago
0
Summary and revised figure

#86 bdevans closed 4 years ago
4
Vcn example

#85 bdevans closed 4 years ago
1
final small changes to text, and addition of HEALTHCHECK reference

#84 vsoch closed 4 years ago
1
Add some examples

#83 nuest closed 4 years ago
0
Stephen's latest edits

#82 nuest closed 4 years ago
0
Final changes from my side

#81 nuest closed 4 years ago
5
Revise mounts

#80 bdevans closed 4 years ago
2
Rule consistency

#79 bdevans closed 4 years ago
5
Clarify preproducibility

#78 nuest closed 4 years ago
1
Improve and clarify bind mounts vs. volumes

#77 nuest closed 4 years ago
3
Rules 6 & 7

#76 bdevans closed 4 years ago
9
Add examples

#75 nuest closed 4 years ago
1
Embellish introduction

#74 bdevans closed 4 years ago
1
Editorial review

#73 CRBrennecka closed 4 years ago
2
Add source code and tweak executable label

#72 bdevans closed 4 years ago
6
Source code for figure

#71 nuest closed 4 years ago
0
ENV and ARG

#70 nuest closed 4 years ago
3
Submission

#69 nuest closed 4 years ago
20
Include feedback from OSF (Hypothesis), use CRediT taxonomy for contributions, includes editorial review

#68 nuest closed 4 years ago
17
Deprecated label schema

#67 bdevans closed 4 years ago
3
Missing reference in Rule 9

#66 bdevans closed 4 years ago
1
Restructure rules and various small improvements/trimming based on discussion around visual summary

#65 bdevans closed 4 years ago
17
Container analogy

#64 bdevans closed 4 years ago
0
Fix some minor typos and adjust phrasing

#63 bdevans closed 4 years ago
4
Add a visual summary

#62 nuest closed 4 years ago
23
Preprint feedback

#61 nuest closed 4 years ago
4
Removing extra lines

#60 vsoch closed 4 years ago
0
removing line about single RUN statement

#59 vsoch closed 4 years ago
3
Add link to Docker Blog

#58 nuest closed 4 years ago
0