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ohnosequences
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mg7
Configurable and scalable 16S metagenomics data analysis
https://goo.gl/y3rZFD
GNU Affero General Public License v3.0
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Generate launch-configuration report
#37
laughedelic
opened
8 years ago
0
Review default Blast output format
#36
laughedelic
closed
8 years ago
11
Include taxonomic lineage in the results
#35
laughedelic
closed
8 years ago
4
Direct counts are all 1s
#34
laughedelic
closed
8 years ago
0
Accumulated counts table has empty name/rank columns
#33
laughedelic
closed
8 years ago
1
Simplify the pipeline
#32
laughedelic
opened
8 years ago
4
Configurable output tables format
#31
laughedelic
opened
8 years ago
0
Filter out zero direct counts
#30
laughedelic
closed
8 years ago
0
Assignment table's header is treated as a data line
#29
laughedelic
closed
8 years ago
0
Taxonomic name is always empty
#28
laughedelic
closed
8 years ago
6
Add scientific name to the assignments table
#27
laughedelic
closed
8 years ago
1
Blast fails with too many files open exception
#26
laughedelic
closed
8 years ago
10
Test M2 on some data
#25
laughedelic
closed
8 years ago
6
Fasta input for pipeline without Flash
#24
laughedelic
closed
8 years ago
5
Add taxonomic name/rank columns to the counts tables
#23
laughedelic
closed
8 years ago
2
Distinguish FASTA and FASTQ inputs
#22
laughedelic
closed
8 years ago
0
Pipelines without split/merge
#21
laughedelic
closed
7 years ago
1
Add counts frequency tables
#20
laughedelic
closed
8 years ago
0
Add taxonomic name and rank to the tables
#19
laughedelic
closed
8 years ago
1
Configurable BLAST command options
#18
laughedelic
closed
8 years ago
0
Add RNACentral reference DB
#17
laughedelic
closed
8 years ago
1
Define more pipelines
#16
laughedelic
closed
8 years ago
2
Configurable some-id to tax-id mapping
#15
laughedelic
closed
8 years ago
0
Document assignment algorithms
#14
laughedelic
closed
8 years ago
1
Planning releases
#13
laughedelic
closed
8 years ago
8
Stabilize dependencies for the release
#12
laughedelic
closed
8 years ago
0
Add not-assigned counts
#11
laughedelic
closed
8 years ago
3
Add headers in the csv files
#10
laughedelic
closed
8 years ago
0
General stats output
#9
laughedelic
closed
8 years ago
6
Groups of samples
#8
laughedelic
closed
7 years ago
1
Project-wise summary counts tables
#7
laughedelic
closed
7 years ago
1
Reorganize counts tables
#6
laughedelic
closed
8 years ago
3
Copy of the counts in deliverables bucket
#5
laughedelic
closed
8 years ago
0
Configurable reference database
#4
eparejatobes
closed
8 years ago
0
Add a Gitter chat badge to readme.md
#3
gitter-badger
closed
8 years ago
0
a proper README
#2
eparejatobes
closed
9 years ago
1
Submit preprint to the bioRxiv
#1
eparejatobes
closed
9 years ago
1
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