opencobra memote issues

opencobra / memote

memote – the genome-scale metabolic model test suite

https://memote.readthedocs.io/

Apache License 2.0

128 stars 28 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

WorkerLostError: Worker exited prematurely: signal 6 (SIGABRT).

#719 jeremymchacon closed 3 years ago
1
WorkerLostError: Worker exited prematurely: signal 9 (SIGKILL).

#718 davinsaviro closed 3 years ago
4
WorkerLostError: Worker exited prematurely: signal 9 (SIGKILL)

#717 niazche closed 3 years ago
8
Incorrect calculations

#716 cdanielmachado opened 3 years ago
1
feat: decouple memote history from the git history

#715 mihai-sysbio opened 3 years ago
2
Inconsistency ... in consistency measures?

#714 lcottret closed 3 years ago
6
TimeLimitExceeded: TimeLimitExceeded(7200,)

#713 MarieBurel closed 3 years ago
3
WorkerLostError: Worker exited prematurely: signal 9 (SIGKILL)

#712 alikaynar-kcl closed 3 years ago
3
Custom Tests - Model Scope

#711 jonstrutz11 opened 3 years ago
4
memote diff python

#710 AgustinPardo opened 3 years ago
0
Error with online memote using iYLI647 model

#709 willchenko closed 3 years ago
4
Same file but different consistency result between versions

#708 BT287 closed 3 years ago
2
Vague Error if Gene in Essentiality Data but not Model

#707 jonstrutz11 opened 3 years ago
2
Error running memote online

#706 stelmo closed 1 year ago
2
fix: point to ids column instead of index

#705 carrascomj closed 4 years ago
1
Bug in unit testing (possible upstream problem)

#704 carrascomj closed 4 years ago
2
refactor: split stoichiometry consistency in 3 tests

#703 carrascomj closed 4 years ago
8
Docs missing at https://memote.readthedocs.io/en/latest/test_suite.html

#702 phantomas1234 opened 4 years ago
0
Put a cap on the number of minimal inconsistent stoichiometries

#701 carrascomj closed 4 years ago
10
KeyError: 'metric'

#700 AgustinPardo opened 4 years ago
2
Using json model format

#699 AgustinPardo opened 4 years ago
1
WorkerLostError: Worker exited prematurely: signal 6 (SIGABRT).

#698 AgustinPardo closed 3 years ago
9
Time limit exceeded

#697 ghost closed 3 years ago
4
Fix workflow

#696 Midnighter closed 4 years ago
1
update configuration

#695 Midnighter closed 4 years ago
0
Best practices for memote usage on cluster

#694 franciscozorrilla closed 4 years ago
4
Fix find biomass

#693 Midnighter closed 4 years ago
2
Create a Vue based HTML report

#692 Midnighter opened 4 years ago
0
Create pydantic models for the report data structure

#691 Midnighter opened 4 years ago
0
Enable report commands/functions to utilize existing results via commit hashes and result files

#690 Midnighter opened 4 years ago
0
multiple biomass reactions identified in model with single biomass reaction

#689 BenjaSanchez closed 4 years ago
2
fix: detect minimal uncoservable sets

#688 carrascomj closed 4 years ago
5
how to extract total score

#687 jotech closed 4 years ago
4
Proper syntax for gene annotation ccds

#686 mjenior closed 4 years ago
3
Certificate on memote.io has expired

#685 cdiener closed 4 years ago
1
fix: set threshold to model tolerance when solution is infeasible

#684 carrascomj closed 4 years ago
2
Comparison of models

#683 lemoncxd opened 4 years ago
6
feat: accept solver timeout as parameter on CLI

#682 carrascomj closed 4 years ago
7
feat: enable solver output on debug logging

#681 Midnighter closed 4 years ago
2
memote stuck with a *large* combined reconstruction

#680 mfondi closed 3 years ago
19
refactor: metabolite production/consumption

#679 Midnighter closed 4 years ago
1
fix: change logic of test production and consumption metabolites to speed up the process

#678 carrascomj closed 4 years ago
6
fix: change biomass matching logic

#677 Midnighter closed 5 years ago
1
docs: remove mention of mailing list

#676 Midnighter closed 5 years ago
1
Memote warns about the existence of two biomass reactions, while there is only one.

#675 ChristianLieven closed 5 years ago
5
Memote warns about missing biomass building blocks

#674 ChristianLieven opened 5 years ago
0
Memote doesn’t account for thermodynamics constraints to calculate directionality of reactions

#673 ChristianLieven opened 5 years ago
2
upgrade goodtables

#672 Midnighter closed 5 years ago
1
Deprecate py2

#671 ChristianLieven closed 5 years ago
2
chore: register custom pytest markers to snuff error messages

#670 ChristianLieven closed 5 years ago
3

Previous Next