opencobra memote issues

opencobra / memote

memote – the genome-scale metabolic model test suite

https://memote.readthedocs.io/

Apache License 2.0

128 stars 28 forks source link

issues

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Stoicheiometric Consistency

#769 AnnyMais03 opened 3 weeks ago
5
Add option to output json format reports

#768 LucoDevro opened 1 month ago
4
SBO Tests yield wrong result (at least in JSON)

#767 Schmoho opened 2 months ago
1
Inquiry Regarding Memote's Support for Enzyme-Constrained Metabolic Model Evaluation

#766 wakaka0618 opened 3 months ago
1
Getting error with Numpy

#765 carolinasisco opened 5 months ago
7
License memote report under CC-BY

#764 matthiaskoenig opened 5 months ago
3
Memote Git error

#763 parsanayyara opened 7 months ago
5
MEMOTE throws git errors

#762 SchroederLabWSU opened 8 months ago
3
refactor: replace goodtables with pandera

#761 Midnighter closed 10 months ago
1
Unbounded Flux In Default Medium-error

#760 mascencio27 closed 9 months ago
10
feat: allow setting solver backend early

#759 Midnighter closed 1 year ago
1
Update workflows

#758 Midnighter closed 1 year ago
1
Fix depinfo

#757 Midnighter closed 1 year ago
1
Cycles met ids

#756 hgscott closed 1 year ago
5
Generalize Metabolite IDs in test_detect_energy_generating_cycles

#755 hgscott closed 1 year ago
2
Which version of depinfo is required?

#754 MGSS7 opened 1 year ago
4
MEMOTE throws error when writing html

#753 Wheaties91 opened 1 year ago
2
Does MEMOTE no longer have a website?

#752 Wheaties91 opened 1 year ago
3
Update RegEx patterns for annotation IDs

#751 WalkerKnapp opened 1 year ago
1
Memote under-estimates stoichiometric consistency

#750 rmtfleming opened 1 year ago
6
Remove use of importlib_resources

#749 Midnighter closed 1 year ago
1
Running memote

#748 SoleilSu closed 1 year ago
1
Issue installing memote

#747 adjurhuus closed 1 year ago
2
I can not upload a model to memote web site

#746 pkocabas80 opened 1 year ago
4
Report error: html file can not be generated

#745 pkocabas80 opened 1 year ago
9
WorkerLostError: Worker exited prematurely: signal 9 (SIGKILL) Job: 194.

#744 keshkomar opened 1 year ago
1
Speed Issue for Large Models

#743 mfcesur closed 1 year ago
9
expired certificate

#742 voidsailor closed 1 year ago
2
Anaconda Python 3.8 has an error using MEMOTE.

#741 wupeng1998 closed 1 year ago
5
Convert json output to tsv?

#740 franciscozorrilla closed 1 year ago
2
Docker Image opencobra/memote:0.13.0

#739 pbelmann opened 2 years ago
2
Failing in Sitoichiometric Inconsistency Test

#738 mfcesur closed 2 years ago
4
getting the overall score of a benchmark suite test

#737 shumantov closed 1 year ago
2
All Gems from Carveme and Agora fail the stoichiometric consistency test.

#736 zhanghaoyu9931 closed 1 year ago
2
core dumped during test_consistency.py

#735 bananabenana opened 2 years ago
0
WorkerLostError: Worker exited prematurely: exitcode 155 Job: 210.

#734 maxinyi-vi opened 2 years ago
5
Model consistency

#733 helenaherand closed 2 years ago
1
Codebase/tutorial for addressing output from each test

#732 zoey-rw opened 2 years ago
7
Non-Growth Associated Maintenance Reaction test_ngam_presence

#731 helenaherand opened 2 years ago
3
Wrong formulas/calculations of memote scores

#730 mckohnen closed 2 years ago
1
Replace travis with github actions

#729 carrascomj closed 1 year ago
16
Bad git executable error

#728 Wheaties91 closed 2 years ago
5
WorkerLostError: Worker exited prematurely: signal 9 (SIGKILL) Job: 905.

#727 JHL-452b closed 2 years ago
5
understanding bad quality results for models in online MEMOTE

#726 shumantov closed 2 years ago
4
TypeError: can't pickle SwigPyObject objects

#725 susanGhaderi opened 3 years ago
1
The current solver interface glpk doesn't support setting the optimality tolerance

#724 helenaherand closed 3 years ago
3
MeMote not reading valid Level 3 Version 1 SBML yet not reading annotations as Level 3 Version 2

#723 Wheaties91 closed 3 years ago
7
Typo fix

#722 matthiaskoenig closed 3 years ago
1
SBO Terms Annotation Score is incorrect

#721 famosab opened 3 years ago
1
Reporting an Error

#720 rsmsheriff closed 3 years ago
1