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openvax
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pyensembl
Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl
Apache License 2.0
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Available assemblies
#257
DDudka9
closed
1 year ago
7
Version 1.9.3
#256
timodonnell
closed
2 years ago
1
Bump MAX_ENSEMBL_RELEASE to 104
#255
timodonnell
closed
2 years ago
0
"genome" was provided but still raise an error
#254
limin321
opened
3 years ago
0
Fix transcript id
#253
y9c
closed
2 years ago
1
`.complete` method of `Transcript` class return a wrong result for some transcript ids.
#252
y9c
opened
3 years ago
0
How to run pyensembl using multiple threads?
#251
damianosmel
opened
3 years ago
1
How to select mouse database?
#250
zhoutianrui-tongji
opened
3 years ago
1
Update max ensemble version from 102 -> 103
#249
Jiafi
closed
2 years ago
3
Error when running top_priority_effect() second time in pyramid webapp
#248
pajanne
opened
3 years ago
0
Upping max release: 100 -> 102
#247
julia326
closed
3 years ago
1
Retrieve exon sequences?
#246
pavzz94
opened
3 years ago
0
Added exon_by_id function call
#245
davidcotter
closed
3 years ago
2
How to get protein annotation for a input genomic position
#244
damianosmel
closed
3 years ago
4
Only create cache dir for each Ensembl release if necessary
#243
iskandr
closed
3 years ago
1
Ensemble version of transcript in python API?
#242
arogozhnikov
opened
3 years ago
2
Cache directories created for all releases, not just requested release
#241
dhimmel
closed
3 years ago
2
Max release 100
#240
iskandr
closed
3 years ago
1
No error from improper install
#239
majohn40
opened
3 years ago
1
Max release 100
#238
mattdoug604
closed
3 years ago
2
Potential dependency conflicts between pyensembl and numpy
#237
NeolithEra
closed
4 years ago
3
[Feature Request] Accessing sequences in arbitrary ranges via Genome class
#236
gokceneraslan
opened
4 years ago
0
Does pyensembl cache mirror the upstream file structure?
#235
Hoeze
opened
4 years ago
1
Max release 99
#234
iskandr
closed
4 years ago
1
Missing scaffold genes
#233
gokceneraslan
opened
4 years ago
5
Potential dependency conflicts between pyensembl and numpy
#232
NeolithEra
closed
3 years ago
3
Error when checking that transcript is complete in ensembl69
#231
scottdbrown
closed
4 years ago
0
Add check .start_codon_complete
#230
scottdbrown
closed
4 years ago
2
removed asserts in genome and locus
#229
iskandr
closed
4 years ago
1
Fix URL path generation issues for Windows 10 users.
#228
fabianegli
closed
4 years ago
6
Dangerous use of "assert"
#227
fabianegli
closed
3 years ago
1
Fix chrM / MT normalization
#226
iskandr
closed
4 years ago
1
Incorrect normalization of "chrM" on GRCh38 to "MT"
#225
iskandr
closed
4 years ago
0
New ensembl versions 96 97
#224
iskandr
closed
4 years ago
0
pyensembl CLI installs wrong genome
#223
iskandr
opened
4 years ago
4
Updated ensembl_release_versions.py
#222
Flosz
closed
4 years ago
2
Difference between transcript.exon_intervals and transcript.exons
#221
ysbioinfo
opened
4 years ago
0
Increase max Ensembl version to the current 95
#220
krassowski
closed
5 years ago
4
Database path should not default to gtf path
#219
edurand
opened
5 years ago
0
$ pyensembl install --species mouse --release 93 error
#218
AhmedArslan
closed
4 years ago
2
Unable to download and innstall ensembl data from command line
#217
novo1
closed
4 years ago
6
Implemented comparison on Locus objects
#216
iskandr
closed
5 years ago
4
Error in returning gene.exons
#215
abaltsen
closed
5 years ago
2
Convert TSL to int?
#214
iskandr
closed
5 years ago
2
removing encrypted values from Travis
#213
iskandr
closed
5 years ago
1
Add transcript_support_level (TSL) field
#212
vladsavelyev
closed
5 years ago
16
Get rid of ensembl id validation
#211
iskandr
closed
5 years ago
1
added exception is_valid_id for yeast
#210
rraadd88
closed
5 years ago
2
Add an exception for Saccharomyces cerevisiae in `is_valid_ensembl_id(ensembl_id)` function
#209
rraadd88
closed
5 years ago
0
Upload new versions to both PyPI and bioconda
#208
iskandr
opened
5 years ago
1
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