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oxfordmmm
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gnomonicus
Python code to integrate results of tb-pipeline and provide an antibiogram, mutations and variants
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OutdatedGumpyException
#28
alantsangmb
closed
11 months ago
3
gnomonicus version
#27
alantsangmb
closed
11 months ago
5
minor alleles incorrectly classified as dominant for `1/1` calls
#26
philipwfowler
closed
12 months ago
1
Fix for minor indel nc changes
#25
JeremyWesthead
closed
1 year ago
0
Fix for #22
#24
JeremyWesthead
closed
1 year ago
0
VCF edge case: `TypeError: 'NoneType' object is not subscriptable`
#23
philipwfowler
closed
1 year ago
1
edge case when VCF contains no valid rows
#22
philipwfowler
closed
1 year ago
1
Ensure all values are properly converted to null
#21
JeremyWesthead
closed
1 year ago
0
Bug fixes
#20
JeremyWesthead
closed
1 year ago
0
fails writing JSON data block with Object of type int64 is not serializable
#19
philipwfowler
closed
1 year ago
1
fails if a minor allele has equal numbers of reads in REF and ALT
#18
philipwfowler
closed
1 year ago
2
Fix pickled genome issue
#17
JeremyWesthead
closed
1 year ago
0
Pickled genome objects aren't checked if gumpy is updated
#16
JeremyWesthead
closed
1 year ago
0
Minor aa fixes
#15
JeremyWesthead
closed
1 year ago
0
Cicd docs
#14
JeremyWesthead
closed
1 year ago
0
insertions in reverse complement genes
#13
philipwfowler
closed
1 year ago
1
Large deletions
#12
JeremyWesthead
closed
1 year ago
0
fails to parse detected minor population mutant
#11
philipwfowler
closed
1 year ago
5
Explictly type cast pandas DataFrames to avoid FutureWarnings
#10
JeremyWesthead
closed
1 year ago
0
Add minor index parsing to the CLI script + various pandas index fixes
#9
JeremyWesthead
closed
1 year ago
0
Fixed minority populations. Added extra tests for these
#8
JeremyWesthead
closed
1 year ago
1
Various improvements to tests. Now at 100% coverage
#7
JeremyWesthead
closed
1 year ago
0
InvalidMutationException
#6
alantsangmb
closed
1 year ago
7
No entry found in the catalogue
#5
alantsangmb
closed
1 year ago
9
Dev
#4
JeremyWesthead
closed
1 year ago
0
Rollback python 3.9
#3
JeremyWesthead
closed
2 years ago
0
Added fasta file generation flag to the CLI for user story 3
#2
JeremyWesthead
closed
2 years ago
0
To json
#1
JeremyWesthead
closed
2 years ago
0
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