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pepkit
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looper
A job submitter for Portable Encapsulated Projects
http://looper.databio.org
BSD 2-Clause "Simplified" License
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Looper 2.0.0 Release
#509
donaldcampbelljr
opened
9 hours ago
0
Polish looper init tutorial and looper init_piface
#508
donaldcampbelljr
closed
11 hours ago
0
Consolidate pifaces
#507
donaldcampbelljr
closed
9 hours ago
2
v1.9.0 release
#506
donaldcampbelljr
closed
5 days ago
0
Dev rename args 455
#505
donaldcampbelljr
closed
9 hours ago
0
Dev 270 rework
#504
donaldcampbelljr
closed
6 days ago
0
infer pipeline_type directly from interface
#503
donaldcampbelljr
closed
1 week ago
0
add hierarchical var_templates #334
#502
donaldcampbelljr
closed
1 week ago
0
Dev add sample mods looperconfig 270
#501
donaldcampbelljr
closed
1 week ago
0
Add bulker support
#500
donaldcampbelljr
closed
1 week ago
1
Add keyboard interrupt for subprocesses
#499
donaldcampbelljr
closed
2 weeks ago
0
how do to parallel-process files with looper locally -- lump them together, this will group several commands in one like:
#498
donaldcampbelljr
opened
3 weeks ago
1
KeyError: '_cli_extra' when calling looper run
#497
joseverdezoto
closed
1 week ago
4
Issue 492 refactor pipestat
#496
donaldcampbelljr
closed
3 weeks ago
1
pin pipestat>=0.8.0,<0.9.0
#495
donaldcampbelljr
closed
1 month ago
0
Error running the CLI
#494
nleroy917
closed
1 month ago
2
For Looper 2.0, we will consolidate sample and project level pipeline interfaces under a single interface.
#493
donaldcampbelljr
opened
1 month ago
0
Refactor Looper's integration of Pipestat
#492
donaldcampbelljr
closed
3 weeks ago
12
PyTestReturnNotNoneWarning
#491
donaldcampbelljr
closed
1 week ago
1
Input PEP for Looper vs output PEP given to Pipestat
#490
donaldcampbelljr
closed
1 week ago
1
Workaround for shortform arguments
#489
donaldcampbelljr
closed
1 month ago
4
Imprecise looper documentation for getting started
#488
kripkd
closed
3 weeks ago
2
Looper v1.8.0 Release
#487
donaldcampbelljr
closed
3 weeks ago
2
Fix inconsistency with resolving pipeline interfaces depending on single vs a list of interfaces
#486
donaldcampbelljr
closed
3 months ago
0
potential fix for attribute error when inferring project name when loading from csv
#485
donaldcampbelljr
closed
3 months ago
0
Project name cannot be inferred when loading PEP from csv
#484
donaldcampbelljr
closed
3 weeks ago
1
Fix checking for registry path
#483
donaldcampbelljr
closed
3 months ago
0
Dev destroy pipestat results
#482
donaldcampbelljr
closed
3 months ago
0
fix for #467, looper rerun should only rerun failed or waiting jobs
#481
donaldcampbelljr
closed
3 months ago
0
potential fix for #463
#480
donaldcampbelljr
closed
3 months ago
0
Dev fix inspect
#479
donaldcampbelljr
closed
3 months ago
0
add local hello_looper to ensure tests do not fail on github
#478
donaldcampbelljr
closed
3 months ago
0
Feature pydantic argparse cli
#477
donaldcampbelljr
closed
3 months ago
2
Speeding up looper CLI use
#476
nsheff
opened
3 months ago
3
Appending "command_extra" for looper runp appears to be broken
#475
donaldcampbelljr
closed
3 months ago
2
Looper resolves pipeline interface paths differently if multiple interfaces are supplied
#474
donaldcampbelljr
closed
3 weeks ago
0
Dev rethink testing
#473
donaldcampbelljr
closed
4 months ago
0
Adding pydantic argparse cli and Refactor Looper Tests
#472
donaldcampbelljr
closed
3 months ago
8
Looper runp produces `default_project_record_identifier` folder with an empty stats.yaml
#471
donaldcampbelljr
closed
3 weeks ago
2
completed flag check may erroneously stop on regex matches
#470
nsheff
closed
3 weeks ago
6
Does looper destroy also clear pipestat results?
#469
nsheff
closed
3 weeks ago
2
looper destroy is broken
#468
nsheff
closed
3 weeks ago
2
looper rerun is not only running failed jobs, but everything
#467
nsheff
closed
3 weeks ago
1
Making looper approachable for a new project
#466
nsheff
opened
4 months ago
1
It's unclear why the pipeline type is specified both in the pipeline interface and the looper config
#465
nsheff
closed
5 days ago
2
Rethinking looper testing
#464
nsheff
closed
3 weeks ago
8
pipestat status flags are not working correctly
#463
nsheff
closed
3 weeks ago
1
looper inspect is broken
#462
nsheff
closed
3 weeks ago
3
extra pipestat message
#461
nsheff
closed
3 weeks ago
2
Unclear how to configure pipestat namespace name with looper for file backend
#460
nsheff
closed
1 week ago
3
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