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pepkit
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looper
A job submitter for Portable Encapsulated Projects
http://looper.databio.org
BSD 2-Clause "Simplified" License
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Strange behavior of looper check
#459
nsheff
closed
3 weeks ago
5
looper isn't working with sample_table_index
#458
nsheff
closed
3 weeks ago
6
Duplicate error message
#457
nsheff
closed
1 month ago
2
Bugs in `is_registry_path`
#456
nsheff
closed
3 weeks ago
11
Deprecating configuring through PEP
#455
nsheff
opened
4 months ago
3
pydantic warning
#454
nsheff
closed
4 months ago
0
Looper - pephub is broken
#453
nsheff
closed
4 months ago
4
Prep for yacman v1.0
#452
nsheff
opened
4 months ago
2
Update to yacman 0.9.3 to prepare for the new YAMLConfigManager
#451
nsheff
closed
4 months ago
3
finish removing attmap from divvy
#450
nsheff
closed
5 months ago
0
Add developer documentation for command models
#449
zz1874
closed
4 months ago
0
Add remaining arguments to `run` command model
#448
simeoncarstens
closed
5 months ago
6
v1.7.0 release
#447
donaldcampbelljr
closed
5 months ago
0
Customize looper config via cli
#446
donaldcampbelljr
closed
5 months ago
3
Change lump parameters, add --lump-j
#445
donaldcampbelljr
closed
5 months ago
0
`looper` logging cannot be captured although it goes to `stderr`
#444
simeoncarstens
closed
5 months ago
1
add portable flag to looper report
#443
donaldcampbelljr
closed
5 months ago
0
Add portable flag for `looper report`
#442
donaldcampbelljr
closed
4 months ago
0
An HTTP API for the `looper run` command that works with the `pydantic`-based command models
#441
zz1874
closed
4 months ago
2
First iteration of a CLI based on `pydantic` models that allows to run the `hello_looper` example
#440
simeoncarstens
closed
4 months ago
18
Restructure test to avoid running on different executors and triggering hypothesis HealthCheck
#439
vreuter
closed
5 months ago
1
Migrate `argparse` CLI definition to a `pydantic` basis for most important commands
#438
simeoncarstens
closed
3 weeks ago
17
Clearer explanation of `runp` command
#437
simeoncarstens
closed
5 months ago
0
Documentation is unclear about the difference between `looper run` and `looper runp` commands
#436
simeoncarstens
closed
5 months ago
2
Lower bound hypothesis version
#435
vreuter
closed
6 months ago
1
Lower bound hypothesis version for tests
#434
vreuter
closed
6 months ago
0
Discussion: add HTTP API for `looper`
#433
simeoncarstens
opened
6 months ago
5
Clarity on looper config file vs project config file (for pepatac)
#432
rcorces
closed
6 months ago
2
tab completion
#431
donaldcampbelljr
closed
6 months ago
0
Making set of selected attributes type casts input to int but PEP attributes loads as string
#430
donaldcampbelljr
closed
6 months ago
0
Dev 126 selectors on flags
#429
donaldcampbelljr
closed
6 months ago
1
Command template variables error during render when using `runp`
#428
donaldcampbelljr
closed
6 months ago
1
Schema validation error should provide more details.
#427
donaldcampbelljr
closed
6 months ago
1
Use registry_path checker from pephubclient
#426
khoroshevskyi
closed
3 months ago
3
Better Error Messages (pipestat implementation)
#425
donaldcampbelljr
closed
3 weeks ago
2
Right now `looper.pep_config` isn't working if the path given is a pephub path.
#424
donaldcampbelljr
closed
6 months ago
3
looper variable namespaces should be updated to contain what is in the `.looper` config file
#423
donaldcampbelljr
closed
6 months ago
3
Add tab completion to Looper
#422
donaldcampbelljr
closed
6 months ago
3
docs for `write_sample_yaml` don't say how to access it (it's {sample.sample_yaml_path})
#421
donaldcampbelljr
closed
6 months ago
0
looper is forcing the pipeline file to be executable, even if the command template doesn't execute it
#420
donaldcampbelljr
closed
6 months ago
3
plugins should live in `plugins.py`
#419
donaldcampbelljr
closed
6 months ago
0
the pipeline interface `init` function specifies an output schema, but doesn't initialize one.
#418
donaldcampbelljr
closed
6 months ago
2
the pipeline interface `init` by `looper init-piface` shouldn't be named "generic"
#417
donaldcampbelljr
closed
6 months ago
0
pytest passes locally but fails on github: hypothesis.errors.FailedHealthCheck
#416
donaldcampbelljr
closed
5 months ago
7
Proposed revision to lump functionality
#415
nsheff
closed
4 months ago
1
Looper process streamlining
#414
nsheff
closed
4 weeks ago
3
Looper should use hook/plugin system to construct pipestat config files
#413
donaldcampbelljr
closed
1 month ago
3
Pipestat polish
#412
donaldcampbelljr
closed
10 months ago
1
Change how looper determines pipestat configuration
#411
donaldcampbelljr
closed
6 months ago
2
KeyError: 'looper_config'
#410
nsheff
closed
6 months ago
0
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