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pepkit
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looper
A job submitter for Portable Encapsulated Projects
http://looper.databio.org
BSD 2-Clause "Simplified" License
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refactor tests for new hello_looper changes
#525
donaldcampbelljr
closed
2 days ago
0
`sizing` keyword is not working correctly
#524
nsheff
opened
1 week ago
1
looper is not validating inputs correctly
#523
nsheff
opened
1 week ago
3
looper report runs pipestat summarize multiple times
#522
donaldcampbelljr
opened
3 weeks ago
0
input schema fails to validate
#521
donaldcampbelljr
closed
1 month ago
1
divvy init gives error when initializing new default
#520
donaldcampbelljr
opened
1 month ago
0
looper config should allow for pipestat pephub path.
#519
donaldcampbelljr
opened
1 month ago
1
looper cli is not taking priority if cli modifiers are used in looper config
#518
donaldcampbelljr
opened
1 month ago
3
Error: looper requires JWT for retrieving public PEP from PEPhub
#516
nsheff
opened
1 month ago
5
Improve error message for bad looper config
#515
nsheff
opened
1 month ago
6
Make suggested changes to `looper init`
#514
donaldcampbelljr
opened
1 month ago
4
divvy list error
#512
nsheff
opened
1 month ago
1
Remove printed dict at looper finish
#511
donaldcampbelljr
opened
1 month ago
1
v1.9.1 release
#510
donaldcampbelljr
closed
2 months ago
0
Looper 2.0.0 Release
#509
donaldcampbelljr
opened
3 months ago
0
Polish looper init tutorial and looper init_piface
#508
donaldcampbelljr
closed
3 months ago
0
Consolidate pifaces
#507
donaldcampbelljr
closed
3 months ago
2
v1.9.0 release
#506
donaldcampbelljr
closed
3 months ago
0
Dev rename args 455
#505
donaldcampbelljr
closed
3 months ago
0
Dev 270 rework
#504
donaldcampbelljr
closed
3 months ago
0
infer pipeline_type directly from interface
#503
donaldcampbelljr
closed
3 months ago
0
add hierarchical var_templates #334
#502
donaldcampbelljr
closed
3 months ago
0
Dev add sample mods looperconfig 270
#501
donaldcampbelljr
closed
3 months ago
0
Add bulker support
#500
donaldcampbelljr
closed
3 months ago
1
Add keyboard interrupt for subprocesses
#499
donaldcampbelljr
closed
3 months ago
0
how do to parallel-process files with looper locally -- lump them together, this will group several commands in one like:
#498
donaldcampbelljr
opened
3 months ago
1
KeyError: '_cli_extra' when calling looper run
#497
joseverdezoto
closed
3 months ago
4
Issue 492 refactor pipestat
#496
donaldcampbelljr
closed
4 months ago
1
pin pipestat>=0.8.0,<0.9.0
#495
donaldcampbelljr
closed
4 months ago
0
Error running the CLI
#494
nleroy917
closed
4 months ago
2
For Looper 2.0, we will consolidate sample and project level pipeline interfaces under a single interface.
#493
donaldcampbelljr
opened
4 months ago
0
Refactor Looper's integration of Pipestat
#492
donaldcampbelljr
closed
3 months ago
12
PyTestReturnNotNoneWarning
#491
donaldcampbelljr
closed
3 months ago
1
Input PEP for Looper vs output PEP given to Pipestat
#490
donaldcampbelljr
closed
3 months ago
1
Workaround for shortform arguments
#489
donaldcampbelljr
closed
4 months ago
4
Imprecise looper documentation for getting started
#488
kripkd
closed
3 months ago
2
Looper v1.8.0 Release
#487
donaldcampbelljr
closed
3 months ago
2
Fix inconsistency with resolving pipeline interfaces depending on single vs a list of interfaces
#486
donaldcampbelljr
closed
6 months ago
0
potential fix for attribute error when inferring project name when loading from csv
#485
donaldcampbelljr
closed
6 months ago
0
Project name cannot be inferred when loading PEP from csv
#484
donaldcampbelljr
closed
3 months ago
1
Fix checking for registry path
#483
donaldcampbelljr
closed
6 months ago
0
Dev destroy pipestat results
#482
donaldcampbelljr
closed
6 months ago
0
fix for #467, looper rerun should only rerun failed or waiting jobs
#481
donaldcampbelljr
closed
6 months ago
0
potential fix for #463
#480
donaldcampbelljr
closed
6 months ago
0
Dev fix inspect
#479
donaldcampbelljr
closed
6 months ago
0
add local hello_looper to ensure tests do not fail on github
#478
donaldcampbelljr
closed
6 months ago
0
Feature pydantic argparse cli
#477
donaldcampbelljr
closed
6 months ago
2
Speeding up looper CLI use
#476
nsheff
opened
6 months ago
4
Appending "command_extra" for looper runp appears to be broken
#475
donaldcampbelljr
closed
6 months ago
2
Looper resolves pipeline interface paths differently if multiple interfaces are supplied
#474
donaldcampbelljr
closed
3 months ago
0
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