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pepkit
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looper
A job submitter for Portable Encapsulated Projects
http://looper.databio.org
BSD 2-Clause "Simplified" License
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Pipestat compatibility and move table function to pipestat
#409
donaldcampbelljr
closed
10 months ago
3
406 relative path
#408
khoroshevskyi
closed
10 months ago
0
refactor CLI code
#407
nsheff
closed
10 months ago
2
Relative directory for pipeline interfaces.
#406
nsheff
closed
6 months ago
2
Looper config default filename: start with a dot?
#405
nsheff
closed
10 months ago
8
Reduce tests to use less subprocesses
#404
donaldcampbelljr
closed
10 months ago
1
new_peppy to dev
#403
donaldcampbelljr
closed
10 months ago
1
Not submitted: pipeline interface is missing 'command_extra' section
#402
nsheff
closed
3 months ago
4
New peppy
#401
nsheff
closed
10 months ago
0
Release 1.6.0
#400
nsheff
closed
6 months ago
5
how to specify looper output dir
#399
nsheff
closed
6 months ago
2
AttributeError: 'Project' object has no attribute '_config'
#398
nsheff
closed
6 months ago
1
bad error message
#397
nsheff
closed
6 months ago
1
rename 'config_file' arg for looper init?
#395
nsheff
closed
6 months ago
3
clean up divvy docs. Fix #393
#394
nsheff
closed
10 months ago
0
Clean up divvy docs
#393
nsheff
closed
6 months ago
0
KeyError: '_cli_extra'
#392
nsheff
closed
6 months ago
2
v1.5.1
#391
donaldcampbelljr
closed
10 months ago
0
looper summarize, report, table
#390
donaldcampbelljr
closed
6 months ago
1
added looper config file argument
#389
khoroshevskyi
closed
11 months ago
0
Looper v1.5.0 release
#388
donaldcampbelljr
closed
11 months ago
2
Simple check to see if provided pipelines are callable during write_script
#387
donaldcampbelljr
closed
11 months ago
0
Change some tests to no longer use subprocess
#386
donaldcampbelljr
closed
11 months ago
3
1.4.3 fix
#385
donaldcampbelljr
closed
11 months ago
1
Expand paths after rendering var_templates. For point release v1.4.2.
#384
donaldcampbelljr
closed
11 months ago
1
Use pipestats summarize
#383
donaldcampbelljr
closed
11 months ago
0
v1.4.1
#382
khoroshevskyi
closed
1 year ago
1
looper update for eido v0.2.0
#381
nsheff
closed
1 year ago
0
Can Looper configure different mem and cores for each command of a pipeline, if yes and how?
#380
zhangzhen
closed
6 months ago
2
Allow looper config to be customizable on command line
#379
nsheff
closed
5 months ago
1
divvy reintegration
#378
ayobi
closed
1 year ago
15
divvy reintegration
#377
ayobi
closed
1 year ago
0
Divvy reintegration
#376
ayobi
closed
1 year ago
0
Divvy reintegration
#375
ayobi
closed
1 year ago
0
Remove --toggle-key functionality
#374
donaldcampbelljr
closed
1 year ago
0
Fix order of script outputs.
#373
donaldcampbelljr
closed
1 year ago
0
Add example that running project pipeline interface
#372
khoroshevskyi
closed
5 months ago
1
Remove (direct) attmap dependency
#371
vreuter
closed
1 year ago
0
Some tests require internet connection
#370
vreuter
closed
11 months ago
1
Added pephub support in looper
#369
khoroshevskyi
closed
1 year ago
3
Add ability to create a generic pipeline interface
#368
donaldcampbelljr
closed
1 year ago
3
Allow range- or scalar-defined, index-based filtering of samples
#367
vreuter
closed
1 year ago
0
If 'annotation_sheet.csv' is without samples, looper throws 'NoneType' error
#366
ayobi
closed
1 year ago
1
Replaced SAMPLE_NAME_ATTR with sample_table_index where seen
#365
ayobi
closed
1 year ago
1
Looper pytesting sometimes does not clean up .looper.yaml file causing false positive in testing
#364
donaldcampbelljr
closed
11 months ago
3
Condensing and applying range utility logic
#363
vreuter
closed
1 year ago
0
test against 3.9 and 3.10; #340
#362
vreuter
closed
1 year ago
1
Add required argument to LooperCounter.show() call in Cleaner
#361
vreuter
closed
1 year ago
0
Enum type for entity level type/name
#360
vreuter
closed
1 month ago
2
What is the difference between preview_flag and dry_run for Cleaner and Destroyer ?
#359
vreuter
closed
1 year ago
1
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