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pepkit
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looper
A job submitter for Portable Encapsulated Projects
http://looper.databio.org
BSD 2-Clause "Simplified" License
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Cleaner appears broken
#358
vreuter
closed
1 year ago
0
Create test in pytest to check that rendered var_templates are passed back to the pipeline namespace.
#357
donaldcampbelljr
closed
11 months ago
1
Rendered pipeline interface var_templates need to be passed back to pipeline namespace
#356
donaldcampbelljr
closed
1 year ago
1
Local variable used before defined in Checker
#355
vreuter
closed
11 months ago
1
Intended behavior for sample validation against schemas
#354
vreuter
closed
1 year ago
3
Simplify tests
#353
nsheff
closed
6 months ago
5
Fix broken test and CI action
#352
vreuter
closed
1 year ago
1
Apply black and tweak configuration for CI
#351
vreuter
closed
1 year ago
0
CI fails on dev
#350
vreuter
closed
1 year ago
2
support 3.8 - 3.11 and only test bookend versions; close #347
#349
vreuter
closed
1 year ago
1
bump peppy dependency to latest release version; close #346
#348
vreuter
closed
1 year ago
1
Supported versions and test matrix
#347
vreuter
closed
1 year ago
0
Bump peppy dependency to latest version
#346
vreuter
closed
1 year ago
0
Replace attmap dependency with updated yacman
#345
nsheff
closed
1 year ago
0
Design of looper configuration
#344
nsheff
closed
11 months ago
0
Re-integrate divvy into looper
#343
nsheff
closed
11 months ago
1
Decouple the looper pipeline settings from the PEP sample metadata
#342
nsheff
closed
11 months ago
2
Looper should speak pephub
#341
nsheff
closed
11 months ago
3
Please update code as per python 3.10
#340
svsuresh
closed
1 year ago
2
How to use looper to run samples concurrently on a local machine
#339
ShannonDaddy
closed
1 year ago
2
New sample table index variables in config file
#338
nsheff
closed
1 year ago
4
looper 1.4.0 is incompatible with peppy 0.32.0
#337
nsheff
closed
2 years ago
2
Release 1.3.2
#336
nsheff
closed
2 years ago
0
implement write_custom_template plugin
#335
nsheff
closed
1 year ago
1
Idea: hierarchy of var_templates
#334
nsheff
closed
2 weeks ago
4
Release 1.4.0
#333
nsheff
closed
1 year ago
0
Hotfix failed flag -- release 1.3.1
#332
nsheff
closed
3 years ago
3
Pipestat warnings on dev are a bit verbose
#331
nsheff
closed
11 months ago
2
Use logmuse for logging setup
#330
stolarczyk
closed
1 year ago
4
multiple bugs in writing sample yamls fails with custom path
#329
nsheff
closed
1 year ago
5
looper debug option is missing
#328
nsheff
closed
1 year ago
12
Looper init piface
#327
nsheff
closed
1 year ago
2
No job status flags in results folder
#326
aaron-gu
closed
11 months ago
3
Broken Link in Documentation
#325
mbergins
closed
3 years ago
1
Excluding samples numerically / by index
#324
arpanda
closed
1 year ago
8
clarify docs on variable namespaces
#323
nsheff
closed
1 year ago
1
Is the path variable still a thing?
#322
nsheff
closed
1 year ago
8
Feature idea: --skip
#321
nsheff
closed
1 year ago
2
RecursionError
#320
nsheff
closed
1 year ago
4
validate the output of the pre-submission hooks
#319
stolarczyk
closed
3 months ago
2
Error reading dynamic variables
#318
nsheff
closed
3 months ago
4
Update yacman
#317
nsheff
closed
3 years ago
1
Error with peppy
#316
nsheff
closed
1 year ago
4
How looper write to divvy template before the submission?
#315
arpanda
closed
3 years ago
7
RecursionError when running bedmaker with Looper
#314
xuebingjie1990
closed
1 year ago
11
Looper as a plugin for Airflow
#313
AllamSudhakara
closed
1 month ago
1
docs version
#312
vreuter
closed
3 years ago
4
hello world page missing?
#311
vreuter
closed
3 years ago
2
redundant code in CWL plugin?
#310
stolarczyk
closed
3 years ago
6
CWL plugin requires input schema
#309
stolarczyk
closed
3 years ago
2
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