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phac-nml
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staramr
Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.
Apache License 2.0
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staramr db info error: [Errno 2] No such file or directory: 'mlst'
#166
FeMa94
closed
1 year ago
4
Include drug resistances from PointFinder in StarAMR report
#165
apetkau
closed
1 year ago
1
Change sensitive to susceptible in report
#164
apetkau
closed
1 year ago
1
Fixed install instructions to not mention specific version of staramr
#163
apetkau
closed
1 year ago
0
Bioconda channel order
#162
lenorakepler
closed
1 year ago
2
Update Galaxy STARamr and add a text option for pointfinder species
#161
pimarin
opened
2 years ago
4
Print error even if blast error message does not match pattern
#160
apetkau
closed
2 years ago
0
Ignore Underscores within Brackets of Plasmid FASTA Record ID
#159
emarinier
closed
2 years ago
2
Some plasmidfinder blast results causing staramr to crash
#158
apetkau
closed
2 years ago
0
Updated ecoli pointfinder gene-drug mapping
#157
apetkau
closed
2 years ago
0
Switch version to 0.9.0
#156
apetkau
closed
2 years ago
0
better error messages for empty results list
#155
bgruening
closed
2 years ago
4
Adds Promoters, Indels to Pointfinder Processing
#154
emarinier
closed
2 years ago
1
Example of pointfinder check
#153
pimarin
closed
2 years ago
0
update pointfinder database to include all species
#152
pimarin
closed
2 years ago
11
Remove warning when aggegating
#151
apetkau
closed
2 years ago
0
Allow additional pointfinder organisms but generate a warning
#150
apetkau
closed
2 years ago
0
Update/database
#149
apetkau
closed
2 years ago
0
Update staramr databases
#148
apetkau
closed
2 years ago
1
Change strict restriction on PointFinder organisms to be a warning
#147
apetkau
closed
2 years ago
2
Fix/pandas summary
#146
apetkau
closed
2 years ago
0
Fix/pandas summary
#145
apetkau
closed
2 years ago
0
add more species to pointfinder analysis list
#144
pimarin
closed
2 years ago
2
Customize threshold for hit detection
#143
andreaniml
closed
2 years ago
2
ModuleNotFoundError: No module named 'staramr'
#142
neelam19051
closed
2 years ago
6
Can;t install staramr, blast not found.
#141
Abelcanc3rhack3r
closed
2 years ago
2
Genome length error
#140
XtineLiu
closed
2 years ago
2
neisseria gonorrhoeae point finder database
#139
peflanag
closed
2 years ago
3
Fix/GitHub it dev
#138
apetkau
closed
2 years ago
0
Fix integration tests
#137
apetkau
closed
2 years ago
0
toList error type
#136
safinaARK
closed
2 years ago
2
N50 < 10000
#135
MarcelaHer
closed
2 years ago
1
AttributeError: 'NoneType' object has no attribute 'tolist'
#134
arif-tanmoy
closed
3 years ago
3
bioconda dependencies
#133
pmenzel
closed
2 years ago
2
aac(6')-Iaa excluded
#132
Andrea-SS
closed
3 years ago
2
PointFinder - mutations in gyrA gene
#131
evangelosmourkas
closed
3 years ago
4
Update default dbs
#130
apetkau
closed
2 years ago
2
staramr db info error
#129
srosales712
closed
3 years ago
3
Switch from travis to GitHub actions
#128
JeffreyThiessen
closed
3 years ago
3
Coverage
#127
peflanag
closed
3 years ago
2
Fixes staramr so it works for newer pandas
#126
apetkau
closed
4 years ago
1
Skip running MLST
#125
apetkau
opened
4 years ago
2
RuntimeWarning
#124
vappiah
closed
2 years ago
1
Run error in Galaxy 19.05
#123
PHemarajata
closed
4 years ago
1
Issue when running search
#122
izakbed
closed
4 years ago
7
Unknown mutations in PointFinder?
#121
ireneortega
closed
1 year ago
8
PlasmidFinder database
#120
ireneortega
closed
4 years ago
2
trouble putting staramr 0.7.1 in a docker image
#119
kapsakcj
closed
4 years ago
3
staramr fails re-run on Galaxy
#118
Takadonet
closed
4 years ago
1
Doc/installation
#117
apetkau
closed
4 years ago
0
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