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tacc-openneuro
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MRIQC: "Permission denied: '/home/mriqc/.cache'"
#86
jbwexler
opened
3 weeks ago
3
ds004009-fmriprep- "error: GCAhistoScaleImageIntensities: could not find wm peak^@"
#85
jbwexler
opened
1 month ago
0
ds002738-fmriprep: "Description: ITK ERROR: ITK only supports orthonormal direction cosines. No orthonormal definition found!"
#84
jbwexler
opened
1 month ago
0
ds003721-fmriprep: "Only one time point!"
#83
jbwexler
opened
1 month ago
1
ds003669-fmriprep: "ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED***"
#82
jbwexler
opened
1 month ago
1
Need to write a script to fix minimal-mode datasets after the fact
#81
jbwexler
opened
1 month ago
0
ds002169_fmriprep: "ITK ERROR: ITK only supports orthonormal direction cosines."
#80
jbwexler
opened
2 months ago
1
Matplotlib errors while running MRIQC
#79
lixinqiu98
opened
3 months ago
2
ds002574-fmriprep (minimal mode): "Error occurred when preparing to run topup"
#78
jbwexler
opened
9 months ago
1
ds004302-mriqc: "ValueError: Input X contains NaN"
#77
jbwexler
opened
9 months ago
0
ds001555-fmriprep (minimal mode): "mritotal: Command not found."
#76
jbwexler
closed
1 month ago
1
ds003346-mriqc: "The 'in_file' trait of a _ReadSidecarJSONInputSpec instance must be a path like object or string representing an existing file"
#75
jbwexler
opened
11 months ago
0
ds004187-mriqc: "ValueError: Input X contains NaN."
#74
jbwexler
opened
11 months ago
0
ds003059-mriqc: "bids.exceptions.BIDSDerivativesValidationError: Every valid BIDS-derivatives dataset must have a GeneratedBy.Name field set inside 'dataset_description.json'."
#73
jbwexler
opened
1 year ago
0
ds003540-mriqc: "nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node ICA."
#72
jbwexler
opened
1 year ago
0
ds004299-fmriprep: "Exception raised while executing Node topup"
#71
jbwexler
opened
1 year ago
2
ds003550-fmriprep: "IndexError: boolean index did not match indexed array along dimension 0; dimension is 39 but corresponding boolean dimension is 64"
#70
jbwexler
opened
1 year ago
1
ds002837-fmriprep: ICA-AROMA issues
#69
jbwexler
closed
1 year ago
4
ds003604-fmriprep: "nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node n4_correct."
#68
jbwexler
opened
1 year ago
5
ds001497-fmriprep: "OSError: [Errno 39] Directory not empty: 'label'"
#67
jbwexler
closed
1 year ago
6
ds001510-mriqc: gets stuck after "dsplots" and doesn't exit job
#66
jbwexler
closed
11 months ago
1
ds002320-mriqc: "IndexError: cannot do a non-empty take from an empty axes."
#65
jbwexler
opened
1 year ago
0
Note version of software run in README
#64
effigies
closed
1 year ago
1
Remove --resource-monitor
#63
effigies
closed
1 year ago
1
fmriprep vs23.0.0 fsaverage issues
#62
jbwexler
closed
1 year ago
6
ds003604-fmriprep: "ValueError: A fieldmap or phase-difference estimation type was found, but an anatomical reference (magnitude1 file) is missing."
#61
jbwexler
closed
1 year ago
5
To consider: Remove AROMA, possibly add MNI152NLin6Asym output space
#60
effigies
opened
1 year ago
1
MRIQC v23.0.0: "mriqc: error: One or more participant labels were not found in the BIDS directory: s8177."
#59
jbwexler
closed
1 year ago
4
ds002843-mriqc: "Can't use dataset with < 5 time points per voxel!"
#58
jbwexler
closed
1 year ago
3
Add `git annex fsck` after `datalad get` to check the hash of downloaded files
#57
effigies
closed
1 year ago
1
ds003777-mriqc: "nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node outliers."
#56
jbwexler
opened
1 year ago
0
ds004042-mriqc: sub-15 times out
#55
jbwexler
opened
1 year ago
0
ds003688-mriqc: "ValueError: zero-size array to reduction operation minimum which has no identity"
#54
jbwexler
opened
1 year ago
4
ds001218-mriqc: "nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node segmentation."
#53
jbwexler
opened
1 year ago
0
ds003454-mriqc: "numpy.linalg.LinAlgError: SVD did not converge"
#52
jbwexler
opened
1 year ago
7
ds003459-mriqc: "OSError: Error occurred while trying to decode JSON"
#51
jbwexler
opened
1 year ago
5
ENH: Add --me-output-echos to default fmriprep command
#50
effigies
closed
1 year ago
0
ds002237-mriqc: "zran_read returned error: ZRAN_READ_FAIL"
#49
jbwexler
opened
1 year ago
3
ds002311-mriqc: "Exception raised while executing Node non_steady_state_detector"
#48
jbwexler
opened
1 year ago
0
ds001105-mriqc: "the 'tissue_class_map' trait of a FASTOutputSpec instance must be a pathlike object"
#47
jbwexler
opened
1 year ago
0
ds000007-mriqc: "Expected dimension is 4D and you provided a 3D image"
#46
jbwexler
closed
1 year ago
1
ds004007-fmriprep: "The fsaverage link probably points to an older freesurfer version"
#45
jbwexler
opened
1 year ago
5
ds003430-mriqc: "File name too long"
#44
jbwexler
opened
1 year ago
2
ds002995-mriqc: "Conflicting values found for entity 'run' in filename"
#43
jbwexler
opened
1 year ago
0
ds000238-mriqc: "Exception raised while executing Node motion_correct"
#42
jbwexler
opened
1 year ago
2
ds004007-mriqc
#41
jbwexler
opened
1 year ago
1
ds003540-mriqc: "Input data has incompatible dimensionality: Expect ed dimension is 4D and you provided a 3D image"
#40
jbwexler
opened
1 year ago
5
ds002684-mriqc: "ValueError: The number of observations cannot be determined on an empty distance matrix."
#39
jbwexler
opened
1 year ago
6
ds003500-fmriprep: sub-229 hung indefinitely at resume recon-all
#38
jbwexler
closed
1 year ago
4
ds002422: Exception raised while executing Node ICA
#37
jbwexler
opened
1 year ago
2
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