populationgenomics analysis-runner issues

populationgenomics / analysis-runner

MIT License

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issues

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add optiono to subset by samples

#714 Alexander-Stuckey closed 1 day ago
1
Analysis-runner pre-commit does no code inspection?

#713 MattWellie opened 1 week ago
1
Delete some method args

#712 MattWellie closed 1 week ago
0
Correction to helper message

#711 MattWellie opened 3 weeks ago
0
Fix zip_to_zenodo.py blob prefix for subsets with common initial prefixes

#710 jmarshall closed 3 weeks ago
0
Add new script to zip GCS file trees and upload them to Zenodo

#709 jmarshall closed 3 weeks ago
1
Fixes to cromwell status parser and output retriever

#708 EddieLF closed 1 month ago
0
Copy recently added server source files to the server image

#707 jmarshall closed 1 month ago
0
Don't add comment printing command if there are no comments to print

#706 jmarshall closed 1 month ago
1
Remove gvcf_info from VCF export scripts

#705 MattWellie closed 3 weeks ago
0
Configure Dependabot

#704 nevoodoo opened 2 months ago
0
Pip-Audit

#703 nevoodoo closed 1 month ago
0
Add sonarqube to test workflow

#702 violetbrina opened 2 months ago
0
Add workflow for deploying dataproc image

#701 illusional opened 3 months ago
0
More accumulated dataproc Dockerfile changes (and miscellanea)

#700 jmarshall closed 3 months ago
0
Hail 0.2.132 switched from raw setup.py to module build

#699 jmarshall closed 3 months ago
0
Add environment to copy-dataproc-init-script

#698 illusional closed 3 months ago
0
Update dataproc release docs

#697 illusional closed 2 months ago
0
Refactor cromwell endpoint

#696 illusional closed 3 months ago
0
Support repo-less execution + refactor

#695 illusional closed 3 months ago
0
Support repo-less execution + refactor

#694 illusional closed 3 months ago
0
Question

#693 MattWellie opened 4 months ago
1
Fix recursive call

#692 EddieLF closed 4 months ago
1
Use cromwell API, not file

#691 EddieLF closed 4 months ago
0
Parse cromwell workflow metadata script

#690 EddieLF closed 4 months ago
0
Update Dockerfile.hail due to Hail 0.2.132 switching from raw setup.py to module build

#689 jmarshall closed 4 months ago
3
Modify HT copy behaviour

#688 MattWellie closed 5 months ago
0
Upgrade pinned version of cpg-utils in analysis-runner web

#687 dancoates closed 5 months ago
2
Validation of analysis-runner invocation args

#686 MattWellie opened 6 months ago
0
Environment Lock

#685 nevoodoo closed 7 months ago
0
Update pinned cpg-utils version in dataproc install common script

#684 EddieLF closed 7 months ago
0
Fix metamist keys for ar-integration

#683 illusional closed 7 months ago
0
Alter Docker build file

#682 MattWellie closed 7 months ago
3
Stream as bytes, not text

#681 illusional closed 7 months ago
0
Quote curl params

#680 illusional closed 7 months ago
0
Update driver image to 1.5

#679 illusional closed 7 months ago
0
Move some methods to cpg-utils

#678 illusional closed 7 months ago
0
Update analysis-runner -> metamist creator script

#677 illusional closed 7 months ago
0
Untar files update

#676 EddieLF opened 8 months ago
1
Update linters again

#675 illusional closed 8 months ago
0
Update linters

#674 illusional closed 8 months ago
0
Add branch name as attribute

#673 illusional closed 8 months ago
0
Improve docs + error message

#672 illusional closed 9 months ago
0
Add --storage as CLI argument

#671 MattWellie closed 10 months ago
0
Fix print-identity-token on deploy

#670 illusional closed 10 months ago
0
Revert Dockerfile CMD notation change

#669 illusional closed 10 months ago
0
Unset server-secret during deploy

#668 illusional closed 10 months ago
0
Bump + pin web versions

#667 illusional closed 10 months ago
0
Update untar script with cpg_utils import changes

#666 EddieLF closed 10 months ago
0
Update README with link to infrastructure-private tokens

#665 EddieLF closed 10 months ago
0